myRT

myRT report for GCA_001474705.1_Salmonella_enterica_CVM_43798_v1.0

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Seq: JYRP01000003.1 Salmonella enterica strain CVM 43798 43798_contig_3, whole genome shotgun sequence (60893 bp)
Overview 1 RT 1: 52189-59427 bp Neighborhood of RT #1 [52189, 59429] CsgD RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 52189-52806 bp Feature: domain Description: CsgD Location: 52609-52783 bp Feature: domain Description: CsgD Location: 52609-52783 bp Feature: gene Location: 53514-53672 bp Feature: gene Location: 54541-56148 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54832-55429 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54832-55429 bp Feature: domain Description: TIR_2 Location: 55753-56113 bp Feature: domain Description: TIR_2 Location: 55753-561 1 3 bp Feature: gene Location: 56761-59094 bp Feature: domain Description: Prim_Zn_Ribbon Location: 56851-56959 bp Feature: domain Description: Prim_Zn_Ribbon Location: 56851 -56959 bp Feature: domain Description: COG3378 Location: 57568-59083 bp Feature: domain Description: COG3378 Location: 57568-59083 bp Feature: gene Location: 59109-59429 bp Feature: domain Description: DUF5375 Location: 59112-59427 bp Feature: domain Description: DUF5375 Location: 591 1 2-59427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsgD (COG2771), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)