myRT

myRT report for GCA_001475395.1_SMART_1139.v1

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Seq: LPOC01000001.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1139 contig1, whole genome shotgun sequence (301160 bp)
Overview 1 RT 1: 42582-49952 bp Neighborhood of RT #1 [42582, 49954] DUF932 RVT-Retrons GlpR ribokinase LplB Feature: gene Location: 42582-43289 bp Feature: gene Location: 43964-44785 bp Feature: domain Description: DUF932 Location: 44075-44750 bp Feature: domain Description: DUF932 Location: 44075-44750 bp Feature: gene Location: 45036-46760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45174-45798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 451 74-45798 bp Feature: gene Location: 47671-48909 bp Feature: domain Description: GlpR Location: 47674-47866 bp Feature: domain Description: GlpR Location: 47674-47866 bp Feature: domain Description: ribokinase Location: 47971-48835 bp Feature: domain Description: ribokinase Location: 47971 -48835 bp Feature: gene Location: 49058-49954 bp Feature: domain Description: LplB Location: 49073-49952 bp Feature: domain Description: LplB Location: 49073-49952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-Retrons, GlpR (COG1349), ribokinase (PTZ00292), LplB (COG4209)

Seq: LPOC01000024.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1139 contig30, whole genome shotgun sequence (18033 bp)
Overview 1 RT 1: 5366-9802 bp Neighborhood of RT #1 [5366, 9810] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 5366-5869 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5477-5867 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5477-5867 bp Feature: gene Location: 5788-6063 bp Feature: domain Description: InsA Location: 5794-6055 bp Feature: domain Description: InsA Location: 5794-6055 bp Feature: gene Location: 6215-7699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6617-7307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6617-7307 bp Feature: gene Location: 8108-8539 bp Feature: domain Description: PRK10276 Location: 8159-8522 bp Feature: domain Description: PRK102 76 Location: 8159-852 2 bp Feature: gene Location: 8539-9810 bp Feature: domain Description: umuC Location: 8542-9802 bp Feature: domain Description: umuC Location: 8542 -9802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: LPOC01000040.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1139 contig45, whole genome shotgun sequence (3500 bp)
Overview 1 RT 1: 60-3457 bp Neighborhood of RT #1 [60, 3465] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 60-344 bp Feature: domain Description: InsE Location: 72-333 bp Feature: domain Description: InsE Location: 72-3 3 3 bp Feature: gene Location: 386-811 bp Feature: domain Description: PHA02517 Location: 407-746 bp Feature: domain Description: PHA02517 Location: 407-746 bp Feature: gene Location: 1418-2926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1676-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1676-2408 bp Feature: domain Description: GIIM Note: maturase Location: 2483-2681 bp Feature: domain Description: GIIM Note: maturase Location: 2483 -2681 bp Feature: gene Location: 3253-3465 bp Feature: domain Description: PHA02517 Location: 3256-3457 bp Feature: domain Description: PHA02517 Location: 3 256-3 457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)