myRT

myRT report for GCA_001477885.1_Salmonella_enterica_CVM_N29367_v1.0

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Seq: JYUE01000017.1 Salmonella enterica subsp. enterica serovar Litchfield strain CVM N29367 N29367_contig_17, whole genome shotgun sequence (60709 bp)
Overview 1 RT 1: 1465-8682 bp Neighborhood of RT #1 [1465, 8705] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 CsgD Feature: gene Location: 1465-1785 bp Feature: domain Description: DUF5375 Location: 1468-1783 bp Feature: domain Description: DUF5375 Location: 1 468-1 783 bp Feature: gene Location: 1800-4133 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1890-1998 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1 890-1 998 bp Feature: domain Description: COG3378 Location: 2607-4122 bp Feature: domain Description: COG3378 Location: 2607-41 22 bp Feature: gene Location: 4746-6353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5037-5634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5037-5634 bp Feature: domain Description: TIR_2 Location: 5958-6318 bp Feature: domain Description: TIR_2 Location: 5958-631 8 bp Feature: gene Location: 7222-7380 bp Feature: gene Location: 8088-8705 bp Feature: domain Description: CsgD Location: 8508-8682 bp Feature: domain Description: CsgD Location: 8508-8682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), CsgD (COG2771)

Seq: JYUE01000031.1 Salmonella enterica subsp. enterica serovar Litchfield strain CVM N29367 N29367_contig_31, whole genome shotgun sequence (49914 bp)
Overview 1 RT 1: 1866-9012 bp Neighborhood of RT #1 [1866, 9014] MobC Relaxase RVT-Retrons PRK09692 type_I_hlyD type_I_hlyD Feature: gene Location: 1866-2240 bp Feature: domain Description: MobC Location: 2088-2208 bp Feature: domain Description: MobC Location: 2 088-2 2 08 bp Feature: gene Location: 2237-3700 bp Feature: domain Description: Relaxase Location: 2264-2987 bp Feature: domain Description: Relaxase Location: 2 2 64-2 987 bp Feature: gene Location: 3753-4703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3885-4476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3885-4476 bp Feature: gene Location: 5994-7223 bp Feature: domain Description: PRK09692 Location: 5997-7200 bp Feature: domain Description: PRK09692 Location: 5997-72 00 bp Feature: gene Location: 7824-9014 bp Feature: domain Description: type_I_hlyD Location: 7905-8349 bp Feature: domain Description: type_I_hlyD Location: 7905-8349 bp Feature: domain Description: type_I_hlyD Location: 8388-9012 bp Feature: domain Description: type_I_hlyD Location: 8388-9012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), Relaxase (pfam03432), RVT-Retrons, PRK09692 (Integrase; provisional), type_I_hlyD (TIGR01843)