myRT

myRT report for GCA_001479065.1_Salmonella_enterica_CVM_N31392-SQ_v1.0

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Seq: JYVE01000071.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N31392 N31392_contig_71, whole genome shotgun sequence (48807 bp)
Overview 1 RT 1: 113-4922 bp Neighborhood of RT #1 [113, 4927] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 113-1075 bp Feature: gene Location: 1075-2010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 86-1 771 bp Feature: gene Location: 2812-3999 bp Feature: domain Description: PRK10473 Location: 2815-3991 bp Feature: domain Description: PRK1 0473 Location: 281 5-3991 bp Feature: gene Location: 3968-4927 bp Feature: domain Description: PRK10216 Location: 3971-4922 bp Feature: domain Description: PRK1 021 6 Location: 3971 -4922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: JYVE01000024.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N31392 N31392_contig_24, whole genome shotgun sequence (35549 bp)
Overview 1 RT 1: 6037-10162 bp Neighborhood of RT #1 [6037, 10287] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 6037-6564 bp Feature: domain Description: PRK13732 Location: 6040-6562 bp Feature: domain Description: PRK13732 Location: 6040-6562 bp Feature: gene Location: 6685-7158 bp Feature: gene Location: 7732-9399 bp Feature: RT Description: RVT_N Location: 7780-8017 bp Feature: RT Description: RVT_N Location: 7780-8017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8068-8710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8068-8710 bp Feature: domain Description: GIIM Note: maturase Location: 8761-8995 bp Feature: domain Description: GIIM Note: maturase Location: 8761-8995 bp Feature: domain Description: HNHc Note: nucleases Location: 9205-9364 bp Feature: domain Description: HNHc Note: nucleases Location: 92 05-9364 bp Feature: gene Location: 9677-9868 bp Feature: gene Location: 9865-10287 bp Feature: domain Description: DUF1380 Location: 9868-10162 bp Feature: domain Description: DUF1380 Location: 9868-10162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)