myRT

myRT report for GCA_001479395.1_Salmonella_enterica_CVM_N32056-R_v1.0

Download annotations/find similar RTs

Seq: JYWA01000051.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N32056 N32056_contig_51, whole genome shotgun sequence (48593 bp)
Overview 1 RT 1: 25082-29330 bp Neighborhood of RT #1 [25082, 29332] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 25082-25504 bp Feature: domain Description: DUF1380 Location: 25085-25379 bp Feature: domain Description: DUF1 380 Location: 25085-25379 bp Feature: gene Location: 25501-25692 bp Feature: gene Location: 25970-27637 bp Feature: RT Description: RVT_N Location: 26018-26255 bp Feature: RT Description: RVT_N Location: 2601 8-26255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26306-26948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26306-26948 bp Feature: domain Description: GIIM Note: maturase Location: 26999-27233 bp Feature: domain Description: GIIM Note: maturase Location: 26999-27233 bp Feature: domain Description: HNHc Note: nucleases Location: 27443-27602 bp Feature: domain Description: HNHc Note: nucleases Location: 27443-27602 bp Feature: gene Location: 28211-28684 bp Feature: gene Location: 28805-29332 bp Feature: domain Description: PRK13732 Location: 28808-29330 bp Feature: domain Description: PRK1 3732 Location: 28808-29330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: JYWA01000060.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N32056 N32056_contig_60, whole genome shotgun sequence (48763 bp)
Overview 1 RT 1: 43837-48651 bp Neighborhood of RT #1 [43837, 48651] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 43837-44796 bp Feature: domain Description: PRK10216 Location: 43840-44791 bp Feature: domain Description: PRK102 16 Location: 43840-44791 bp Feature: gene Location: 44765-45952 bp Feature: domain Description: PRK10473 Location: 44768-45944 bp Feature: domain Description: PRK10473 Location: 44768-45944 bp Feature: gene Location: 46754-47689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46865-47450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46865-47450 bp Feature: gene Location: 47689-48651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons