myRT

myRT report for GCA_001480285.1_Salmonella_enterica_CVM_N40935-SQ_v1.0

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Seq: JYYT01000035.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N40935 N40935_contig_35, whole genome shotgun sequence (35553 bp)
Overview 1 RT 1: 25263-29511 bp Neighborhood of RT #1 [25263, 29513] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 25263-25685 bp Feature: domain Description: DUF1380 Location: 25266-25560 bp Feature: domain Description: DUF1 380 Location: 25266-25560 bp Feature: gene Location: 25682-25873 bp Feature: gene Location: 26151-27818 bp Feature: RT Description: RVT_N Location: 26199-26436 bp Feature: RT Description: RVT_N Location: 261 99-26436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26487-27129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26487-271 29 bp Feature: domain Description: GIIM Note: maturase Location: 27180-27414 bp Feature: domain Description: GIIM Note: maturase Location: 271 80-2741 4 bp Feature: domain Description: HNHc Note: nucleases Location: 27624-27783 bp Feature: domain Description: HNHc Note: nucleases Location: 27624-27783 bp Feature: gene Location: 28392-28865 bp Feature: gene Location: 28986-29513 bp Feature: domain Description: PRK13732 Location: 28989-29511 bp Feature: domain Description: PRK1 3732 Location: 28989-2951 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: JYYT01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N40935 N40935_contig_11, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 43815-48629 bp Neighborhood of RT #1 [43815, 48629] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 43815-44774 bp Feature: domain Description: PRK10216 Location: 43818-44769 bp Feature: domain Description: PRK102 16 Location: 43818-44769 bp Feature: gene Location: 44743-45930 bp Feature: domain Description: PRK10473 Location: 44746-45922 bp Feature: domain Description: PRK10473 Location: 44746-4592 2 bp Feature: gene Location: 46732-47667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-47428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-4742 8 bp Feature: gene Location: 47667-48629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons