myRT

myRT report for GCA_001480535.1_Salmonella_enterica_CVM_N38910-SQ_v1.0

Download annotations/find similar RTs

Seq: JYXV01000023.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain CVM N38910 N38910_contig_23, whole genome shotgun sequence (20378 bp)
Overview 1 RT 1: 15912-20039 bp Neighborhood of RT #1 [15912, 20104] HAD_PGPPase PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 15912-16559 bp Ori: KUB67723.1 Feature: domain Description: HAD_PGPPase Location: 15939-16509 bp Feature: domain Description: HAD_PGPPase Location: 1 5939-1 6509 bp Feature: gene Location: 17187-17573 bp Ori: KUB67724.1 Feature: domain Description: PHA02517 Location: 17190-17571 bp Feature: domain Description: PHA0251 7 Location: 1 71 90-1 7571 bp Feature: gene Location: 17750-19258 bp Ori: KUB67725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18008-18740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8008-1 8740 bp Feature: domain Description: GIIM Note: maturase Location: 18815-19013 bp Feature: domain Description: GIIM Note: maturase Location: 1 881 5-1 901 3 bp Feature: gene Location: 19865-20104 bp Ori: KUB67726.1 Feature: domain Description: PHA02517 Location: 19868-20039 bp Feature: domain Description: PHA0251 7 Location: 1 9868-20039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_PGPPase (cd02612), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JYXV01000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain CVM N38910 N38910_contig_115, whole genome shotgun sequence (4343 bp)
Overview 1 RT 1: 1568-3875 bp Neighborhood of RT #1 [1568, 4343] AlpA RVT-UG3 Feature: gene Location: 1568-1777 bp Ori: KUB56030.1 Feature: domain Description: AlpA Location: 1574-1763 bp Feature: domain Description: AlpA Location: 1574-1763 bp Feature: gene Location: 1900-2751 bp Feature: gene Location: 3092-4343 bp Ori: KUB56032.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3380-3875 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3380-3875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-UG3