myRT

myRT report for GCA_001481405.1_ASM148140v1

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Seq: LPWB01000055.1 Enterococcus faecium strain MRSN33034 33034_contig00055, whole genome shotgun sequence (23809 bp)
Overview 1 RT 1: 123-3837 bp Neighborhood of RT #1 [123, 3842] RVT-GII HNHc FtsK Feature: gene Location: 123-1982 bp Ori: KUE82955.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1 1 73 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1 728-1 866 bp Feature: gene Location: 2101-2331 bp Feature: gene Location: 2715-3842 bp Feature: domain Description: FtsK Location: 3375-3837 bp Feature: domain Description: FtsK Location: 3375-3837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), FtsK (COG1674)

Seq: LPWB01000134.1 Enterococcus faecium strain MRSN33034 33034_contig00134, whole genome shotgun sequence (7000 bp)
Overview 1 RT 1: 2877-6732 bp Neighborhood of RT #1 [2877, 6851] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc Feature: gene Location: 2877-4061 bp Ori: KUE82040.1 Feature: domain Description: HTH_XRE Location: 2907-3051 bp Feature: domain Description: HTH_XRE Location: 2 907-3051 bp Feature: domain Description: Rol_Rep_N Location: 3084-3348 bp Feature: domain Description: Rol_Rep_N Location: 3084-3348 bp Feature: domain Description: Rep_trans Location: 3372-3984 bp Feature: domain Description: Rep_trans Location: 3372 -3984 bp Feature: gene Location: 4076-4195 bp Ori: KUE82041.1 Feature: domain Description: DUF3789 Location: 4085-4178 bp Feature: domain Description: DUF3789 Location: 4085-4178 bp Feature: gene Location: 4941-6851 bp Ori: KUE82042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5274-6012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 74-6012 bp Feature: domain Description: HNHc Note: nucleases Location: 6567-6732 bp Feature: domain Description: HNHc Note: nucleases Location: 6567-6732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507)

Seq: LPWB01000179.1 Enterococcus faecium strain MRSN33034 33034_contig00179, whole genome shotgun sequence (3229 bp)
Overview 1 RT 1: 55-3227 bp Neighborhood of RT #1 [55, 3229] RVT-AbiP2 HsdM Feature: gene Location: 55-1443 bp Ori: KUE80104.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 316-781 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 16-781 bp Feature: gene Location: 1781-3229 bp Ori: KUE80103.1 Feature: domain Description: HsdM Location: 1802-3227 bp Feature: domain Description: HsdM Location: 1802-3 227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)