myRT

myRT report for GCA_001481455.1_ASM148145v1

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Seq: LMVF01000045.1 Cupriavidus necator strain PHE3-6 contig02001, whole genome shotgun sequence (167197 bp)
Overview 1 RT 1: 47858-53641 bp Neighborhood of RT #1 [47858, 53641] Phage_int_SAM_2 INT_Rci_Hp1_C HTH_8 PRTRC_D RVT-GII GIIM DUF5372 Feature: gene Location: 47858-49009 bp Feature: domain Description: Phage_int_SAM_2 Location: 48008-48224 bp Feature: domain Description: Phage_int_SAM_2 Location: 48008-48224 bp Feature: domain Description: INT_Rci_Hp1_C Location: 48290-48749 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 48290-48749 bp Feature: domain Description: HTH_8 Location: 48911-48989 bp Feature: domain Description: HTH_8 Location: 4891 1 -48989 bp Feature: gene Location: 50122-51123 bp Feature: domain Description: PRTRC_D Location: 50143-51100 bp Feature: domain Description: PRTRC_D Location: 501 43-51 1 00 bp Feature: gene Location: 51917-52714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51920-52283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 920-52283 bp Feature: domain Description: GIIM Note: maturase Location: 52334-52544 bp Feature: domain Description: GIIM Note: maturase Location: 52334-52544 bp Feature: gene Location: 52969-53256 bp Feature: domain Description: DUF5372 Location: 52987-53218 bp Feature: domain Description: DUF5372 Location: 52987-5321 8 bp Feature: gene Location: 53309-53641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), INT_Rci_Hp1_C (cd00796), HTH_8 (pfam02954), PRTRC_D (TIGR03739), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)

Seq: LMVF01000026.1 Cupriavidus necator strain PHE3-6 contig01001, whole genome shotgun sequence (271522 bp)
Overview 1 RT 1: 28706-36648 bp Neighborhood of RT #1 [28706, 36725] RarD PBP2_TRAP_alpha-ketoacid RVT_N RVT-GII GIIM HNHc Maltoporin-like GlpF Feature: gene Location: 28706-29611 bp Feature: domain Description: RarD Location: 28715-29573 bp Feature: domain Description: RarD Location: 2 8715-2 9573 bp Feature: gene Location: 29763-30899 bp Feature: domain Description: PBP2_TRAP_alpha-ketoacid Location: 29913-30879 bp Feature: domain Description: PBP2 _TRAP_alpha-ketoacid Location: 2 9913-30879 bp Feature: gene Location: 31182-32894 bp Feature: RT Description: RVT_N Location: 31239-31482 bp Feature: RT Description: RVT_N Location: 312 39-31482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31527-32175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3152 7-32 175 bp Feature: domain Description: GIIM Note: maturase Location: 32229-32460 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 2 9-32 460 bp Feature: domain Description: HNHc Note: nucleases Location: 32685-32844 bp Feature: domain Description: HNHc Note: nucleases Location: 32 685-32 844 bp Feature: gene Location: 34352-36016 bp Feature: domain Description: Maltoporin-like Location: 34916-36014 bp Feature: domain Description: Maltoporin-like Location: 34916-36014 bp Feature: gene Location: 36000-36725 bp Feature: domain Description: GlpF Location: 36006-36648 bp Feature: domain Description: GlpF Location: 36006-36648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RarD (COG2962), PBP2_TRAP_alpha-ketoacid (cd13682), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Maltoporin-like (cd01346), GlpF (COG0580)