myRT

myRT report for GCA_001485215.1_ASM148521v1

Download annotations/find similar RTs

Seq: BBWW01000002.1 Leptolyngbya sp. NIES-2104 DNA, contig: contig2, whole genome shotgun sequence (318180 bp)
Overview 1 RT 1: 254469-259219 bp Neighborhood of RT #1 [254469, 259245] YhcG_C RVT-GII Intron_maturas2 HNHc DUF1016_N HTH_XRE Feature: gene Location: 254469-254753 bp Feature: gene Location: 254862-255224 bp Ori: GAP99717.1 Feature: domain Description: YhcG_C Location: 254865-255141 bp Feature: domain Description: YhcG_C Location: 254865-2551 41 bp Feature: gene Location: 255456-257258 bp Ori: GAP99718.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255717-256512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25571 7-25651 2 bp Feature: domain Description: Intron_maturas2 Location: 256614-256854 bp Feature: domain Description: Intron_maturas2 Location: 25661 4-256854 bp Feature: domain Description: HNHc Note: nucleases Location: 257022-257196 bp Feature: domain Description: HNHc Note: nucleases Location: 257022-2571 96 bp Feature: gene Location: 257745-258311 bp Ori: GAP99719.1 Feature: domain Description: DUF1016_N Location: 257748-258132 bp Feature: domain Description: DUF1 01 6_N Location: 257748-2581 32 bp Feature: gene Location: 259057-259245 bp Ori: GAP99720.1 Feature: domain Description: HTH_XRE Location: 259060-259219 bp Feature: domain Description: HTH_XRE Location: 259060-25921 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG_C, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1016_N (pfam17761), HTH_XRE (smart00530)

Seq: BBWW01000004.1 Leptolyngbya sp. NIES-2104 DNA, contig: contig4, whole genome shotgun sequence (84246 bp)
Overview 1 RT 1: 47532-54478 bp Neighborhood of RT #1 [47532, 54501] COG0610 RVT-UG2 RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like PIN_VapC-like Feature: gene Location: 47532-47705 bp Feature: gene Location: 47844-50975 bp Ori: GAQ00148.1 Feature: domain Description: COG0610 Location: 47862-50883 bp Feature: domain Description: COG0610 Location: 47862 -50883 bp Feature: gene Location: 51449-52726 bp Ori: GAQ00149.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 51644-52436 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 51644-52 436 bp Feature: gene Location: 52758-54050 bp Ori: GAQ00150.1 Feature: domain Description: RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like Location: 53157-53328 bp Feature: domain Description: RMtype1_S_Cep9333ORF482 7P-TRD2 -CR2 _like Location: 53157-5332 8 bp Feature: domain Description: RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like Location: 53484-53997 bp Feature: domain Description: RMtype1_S_Cep9333ORF482 7P-TRD2 -CR2 _like Location: 53484-53997 bp Feature: gene Location: 54058-54501 bp Ori: GAQ00151.1 Feature: domain Description: PIN_VapC-like Location: 54103-54478 bp Feature: domain Description: PIN_VapC-like Location: 54103-54478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG2, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like (cd17495), PIN_VapC-like (cd18715)