myRT

myRT report for GCA_001485415.1_ASM148541v1

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Seq: BCMQ01000049.1 Myroides odoratimimus DNA, contig: CTG049, strain: CCUG39352, whole genome shotgun sequence (11311 bp)
Overview 1 RT 1: 168-6207 bp Neighborhood of RT #1 [168, 6207] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-Retrons Feature: gene Location: 168-1334 bp Ori: GAQ16023.1 Feature: domain Description: zf-IS66 Location: 177-258 bp Feature: domain Description: zf-IS66 Location: 1 77-258 bp Feature: domain Description: DDE_Tnp_IS66 Location: 321-1164 bp Feature: domain Description: DDE_Tnp_IS66 Location: 321 -1 1 64 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1191-1296 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 91 -1 296 bp Feature: gene Location: 1737-2519 bp Feature: gene Location: 2702-3787 bp Ori: GAQ16025.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2972-3503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2972-3503 bp Feature: gene Location: 3807-4538 bp Feature: gene Location: 5245-6207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-Retrons

Seq: BCMQ01000056.1 Myroides odoratimimus DNA, contig: CTG056, strain: CCUG39352, whole genome shotgun sequence (5819 bp)
Overview 1 RT 1: 151-3501 bp Neighborhood of RT #1 [151, 3962] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J DUF4141 Feature: gene Location: 151-1980 bp Ori: GAQ16062.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-12 58 bp Feature: domain Description: Intron_maturas2 Location: 1327-1720 bp Feature: domain Description: Intron_maturas2 Location: 132 7-172 0 bp Feature: domain Description: HNHc Note: nucleases Location: 1798-1954 bp Feature: domain Description: HNHc Note: nucleases Location: 1798-1954 bp Feature: gene Location: 2494-3327 bp Ori: GAQ16063.1 Feature: domain Description: Bac_Flav_CT_J Location: 2506-3307 bp Feature: domain Description: Bac_Flav_CT_J Location: 2 506-3307 bp Feature: gene Location: 3330-3962 bp Ori: GAQ16064.1 Feature: domain Description: DUF4141 Location: 3348-3501 bp Feature: domain Description: DUF4141 Location: 3348-3501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605)

Seq: BCMQ01000032.1 Myroides odoratimimus DNA, contig: CTG032, strain: CCUG39352, whole genome shotgun sequence (30757 bp)
Overview 1 RT 1: 26640-30419 bp Neighborhood of RT #1 [26640, 30463] PRK05205 RVT-GII GIIM Y1_Tnp Feature: gene Location: 26640-27188 bp Ori: GAQ15771.1 Feature: domain Description: PRK05205 Location: 26652-27171 bp Feature: domain Description: PRK05205 Location: 26652-27171 bp Feature: gene Location: 27345-28154 bp Feature: gene Location: 28408-29691 bp Ori: GAQ15773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28630-29248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2863 0-29248 bp Feature: domain Description: GIIM Note: maturase Location: 29308-29533 bp Feature: domain Description: GIIM Note: maturase Location: 293 08-2953 3 bp Feature: gene Location: 30317-30463 bp Ori: GAQ15774.1 Feature: domain Description: Y1_Tnp Location: 30323-30419 bp Feature: domain Description: Y1_Tnp Location: 3 03 23 -3 0419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05205 (bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR), RVT-GII, GIIM (pfam08388), Y1_Tnp (pfam01797)

Seq: BCMQ01000001.1 Myroides odoratimimus DNA, contig: CTG001, strain: CCUG39352, whole genome shotgun sequence (478860 bp)
Overview 1 RT 1: 274239-280334 bp Neighborhood of RT #1 [274239, 280357] RVT-UG2 TonB_C Feature: gene Location: 274239-275201 bp Feature: gene Location: 275385-276788 bp Feature: gene Location: 277207-278868 bp Ori: GAQ12602.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 277492-278449 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2774 92-2784 4 9 bp Feature: gene Location: 278900-279073 bp Feature: gene Location: 279920-280357 bp Ori: GAQ12604.1 Feature: domain Description: TonB_C Location: 280154-280334 bp Feature: domain Description: TonB_C Location: 280154 -280334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, TonB_C (pfam03544)