myRT

myRT report for GCA_001497455.1_ASM149745v1

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Seq: LJFL01000042.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8161 PsaCFBP8161042, whole genome shotgun sequence (52361 bp)
Overview 1 RT 1: 7365-12667 bp Neighborhood of RT #1 [7365, 12699] DUF4427 RVT-Retrons MscS Feature: gene Location: 7365-8588 bp Feature: domain Description: DUF4427 Location: 8283-8568 bp Feature: domain Description: DUF4427 Location: 8283-8568 bp Feature: gene Location: 8629-8781 bp Feature: gene Location: 8792-9958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9047-9668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9047-9668 bp Feature: gene Location: 10120-11376 bp Feature: gene Location: 11899-12699 bp Feature: domain Description: MscS Location: 12004-12667 bp Feature: domain Description: MscS Location: 1 2004-1 2667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4427 (pfam14468), RVT-Retrons, MscS (COG0668)

Seq: LJFL01000063.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8161 PsaCFBP8161063, whole genome shotgun sequence (22058 bp)
Overview 1 RT 1: 109-4556 bp Neighborhood of RT #1 [109, 4556] Zn_Tnp_IS91 RVT-GII HopW1-1 Feature: gene Location: 109-639 bp Feature: domain Description: Zn_Tnp_IS91 Location: 217-481 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 17-481 bp Feature: gene Location: 1536-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-1704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-1704 bp Feature: gene Location: 1929-4235 bp Feature: domain Description: HopW1-1 Location: 1932-2874 bp Feature: domain Description: HopW1-1 Location: 1932 -2 874 bp Feature: gene Location: 4371-4556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), RVT-GII, HopW1-1 (pfam15457)

Seq: LJFL01000088.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8161 PsaCFBP8161088, whole genome shotgun sequence (5484 bp)
Overview 1 RT 1: 691-5279 bp Neighborhood of RT #1 [691, 5279] SIRT5_Af1_CobB RVT-UG15 Feature: gene Location: 691-1026 bp Feature: gene Location: 1281-2060 bp Feature: domain Description: SIRT5_Af1_CobB Location: 1335-2022 bp Feature: domain Description: SIRT5_Af1_CobB Location: 13 3 5-2022 bp Feature: gene Location: 2341-3987 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2788-3199 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2788-3 199 bp Feature: gene Location: 4298-4564 bp Feature: gene Location: 5103-5279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIRT5_Af1_CobB (cd01412), RVT-UG15

Seq: LJFL01000111.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8161 PsaCFBP8161111, whole genome shotgun sequence (882 bp)
Overview 1 RT 1: 1-832 bp Neighborhood of RT #1 [1, 879] RVT-GII GIIM Feature: gene Location: 1-879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-54 7 bp Feature: domain Description: GIIM Note: maturase Location: 604-832 bp Feature: domain Description: GIIM Note: maturase Location: 604 -832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJFL01000117.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8161 PsaCFBP8161117, whole genome shotgun sequence (782 bp)
Overview 1 RT 1: 382-781 bp Neighborhood of RT #1 [382, 780] RVT-GII Feature: gene Location: 382-780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715-781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715 -781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII