myRT

myRT report for GCA_001497465.1_ASM149746v1

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Seq: LJFN01000030.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180030, whole genome shotgun sequence (82251 bp)
Overview 1 RT 1: 401-5337 bp Neighborhood of RT #1 [401, 5369] TnpB_IS66 RVT-Retrons MscS Feature: gene Location: 401-736 bp Feature: domain Description: TnpB_IS66 Location: 419-707 bp Feature: domain Description: TnpB_IS66 Location: 41 9-707 bp Feature: gene Location: 1257-1451 bp Feature: gene Location: 1462-2628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1717-2338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 71 7-2338 bp Feature: gene Location: 2790-4046 bp Feature: gene Location: 4569-5369 bp Feature: domain Description: MscS Location: 4674-5337 bp Feature: domain Description: MscS Location: 4674-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-Retrons, MscS (COG0668)

Seq: LJFN01000067.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180067, whole genome shotgun sequence (23952 bp)
Overview 1 RT 1: 17189-21982 bp Neighborhood of RT #1 [17189, 22005] REC HopW1-1 RVT-GII Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 17189-17473 bp Feature: domain Description: REC Location: 17216-17426 bp Feature: domain Description: REC Location: 172 16-1742 6 bp Feature: gene Location: 17609-19915 bp Feature: domain Description: HopW1-1 Location: 17612-18554 bp Feature: domain Description: HopW1-1 Location: 17612 -18554 bp Feature: gene Location: 20129-20308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20132-20297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0132 -2 02 97 bp Feature: gene Location: 21205-21735 bp Feature: domain Description: Zn_Tnp_IS91 Location: 21313-21577 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 1313-2 1577 bp Feature: gene Location: 21736-22005 bp Feature: domain Description: Y2_Tnp Location: 21850-21982 bp Feature: domain Description: Y2 _Tnp Location: 2 1850-2 1982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), HopW1-1 (pfam15457), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: LJFN01000100.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180100, whole genome shotgun sequence (5514 bp)
Overview 1 RT 1: 214-4802 bp Neighborhood of RT #1 [214, 4802] RVT-UG15 SIRT5_Af1_CobB Feature: gene Location: 214-390 bp Feature: gene Location: 880-1182 bp Feature: gene Location: 1506-3152 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1953-2364 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1953 -23 64 bp Feature: gene Location: 3433-4212 bp Feature: domain Description: SIRT5_Af1_CobB Location: 3487-4174 bp Feature: domain Description: SIRT5_Af1_CobB Location: 3 487-4174 bp Feature: gene Location: 4467-4802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, SIRT5_Af1_CobB (cd01412)

Seq: LJFN01000126.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180126, whole genome shotgun sequence (782 bp)
Overview 1 RT 1: 3-402 bp Neighborhood of RT #1 [3, 401] RVT-GII Feature: gene Location: 3-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-4 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJFN01000139.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180139, whole genome shotgun sequence (486 bp)
Overview 1 RT 1: 1-433 bp Neighborhood of RT #1 [1, 483] RVT-GII GIIM Feature: gene Location: 1-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-148 bp Feature: domain Description: GIIM Note: maturase Location: 205-433 bp Feature: domain Description: GIIM Note: maturase Location: 205 -433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJFN01000165.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180165, whole genome shotgun sequence (323 bp)
Overview 1 RT 1: 1-322 bp Neighborhood of RT #1 [1, 321] RVT-GII Feature: gene Location: 1-321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJFN01000216.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180216, whole genome shotgun sequence (229 bp)
Overview 1 RT 1: 1-217 bp Neighborhood of RT #1 [1, 228] RVT-GII Feature: gene Location: 1-228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJFN01000219.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8180 PsaCFBP8180219, whole genome shotgun sequence (229 bp)
Overview 1 RT 1: 2-218 bp Neighborhood of RT #1 [2, 226] RVT-GII Feature: gene Location: 2-226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII