myRT

myRT report for GCA_001497555.1_ASM149755v1

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Seq: LJJL01000003.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8160 PsaCFBP8160003, whole genome shotgun sequence (292076 bp)
Overview 1 RT 1: 54308-59462 bp Neighborhood of RT #1 [54308, 59464] BtuE RVT-GII GIIM Toluene_X Feature: gene Location: 54308-54862 bp Feature: domain Description: BtuE Location: 54425-54848 bp Feature: domain Description: BtuE Location: 54425-54848 bp Feature: gene Location: 55533-56021 bp Feature: gene Location: 56056-57423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56389-57004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56389-57004 bp Feature: domain Description: GIIM Note: maturase Location: 57061-57289 bp Feature: domain Description: GIIM Note: maturase Location: 57061 -57289 bp Feature: gene Location: 57754-58104 bp Feature: gene Location: 58181-59464 bp Feature: domain Description: Toluene_X Location: 58238-59462 bp Feature: domain Description: Toluene_X Location: 58238-59462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BtuE (COG0386), RVT-GII, GIIM (pfam08388), Toluene_X (pfam03349)

Seq: LJJL01000024.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8160 PsaCFBP8160024, whole genome shotgun sequence (80231 bp)
Overview 1 RT 1: 11753-18419 bp Neighborhood of RT #1 [11753, 18419] IclR RVT-Retrons DUF4338 Feature: gene Location: 11753-12550 bp Feature: domain Description: IclR Location: 11810-12530 bp Feature: domain Description: IclR Location: 11810-12 530 bp Feature: gene Location: 13285-14082 bp Feature: gene Location: 14245-15408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14500-15115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14500-15115 bp Feature: gene Location: 15504-16739 bp Feature: domain Description: DUF4338 Location: 15642-16518 bp Feature: domain Description: DUF4338 Location: 15642 -16518 bp Feature: gene Location: 16758-18419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IclR (pfam01614), RVT-Retrons, DUF4338 (pfam14236)

Seq: LJJL01000059.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8160 PsaCFBP8160059, whole genome shotgun sequence (22320 bp)
Overview 1 RT 1: 17662-22063 bp Neighborhood of RT #1 [17662, 22224] PRK13557 HopW1-1 RVT-GII Zn_Tnp_IS91 Feature: gene Location: 17662-17871 bp Feature: domain Description: PRK13557 Location: 17683-17824 bp Feature: domain Description: PRK13 557 Location: 17683 -17824 bp Feature: gene Location: 18082-20388 bp Feature: domain Description: HopW1-1 Location: 18085-19027 bp Feature: domain Description: HopW1-1 Location: 18085-19027 bp Feature: gene Location: 20602-20781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20605-20770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20605-20770 bp Feature: gene Location: 21685-22224 bp Feature: domain Description: Zn_Tnp_IS91 Location: 21799-22063 bp Feature: domain Description: Zn_Tnp_IS91 Location: 21799-22063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13557 (histidine kinase; Provisional), HopW1-1 (pfam15457), RVT-GII, Zn_Tnp_IS91 (pfam14319)

Seq: LJJL01000077.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8160 PsaCFBP8160077, whole genome shotgun sequence (4797 bp)
Overview 1 RT 1: 610-4387 bp Neighborhood of RT #1 [610, 4387] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-UG15 Feature: gene Location: 610-1002 bp Feature: gene Location: 868-1335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 904-1174 bp Feature: domain Description: DDE_Tnp_IS66 Location: 904 -1174 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1195-1309 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1195-1309 bp Feature: gene Location: 1640-3286 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2087-2498 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2087-24 98 bp Feature: gene Location: 3578-3754 bp Feature: gene Location: 4115-4387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-UG15