myRT

myRT report for GCA_001497595.1_ASM149759v1

Download annotations/find similar RTs

Seq: LJJM01000002.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8039 PsaCFBP8039002, whole genome shotgun sequence (367895 bp)
Overview 1 RT 1: 61026-67673 bp Neighborhood of RT #1 [61026, 67693] DUF4338 RVT-Retrons IclR Feature: gene Location: 61026-62687 bp Feature: gene Location: 62706-63941 bp Feature: domain Description: DUF4338 Location: 62844-63720 bp Feature: domain Description: DUF4338 Location: 62844-63720 bp Feature: gene Location: 64037-65200 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64292-64907 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64292-64907 bp Feature: gene Location: 65363-66622 bp Feature: gene Location: 66896-67693 bp Feature: domain Description: IclR Location: 66953-67673 bp Feature: domain Description: IclR Location: 66953-67673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4338 (pfam14236), RVT-Retrons, IclR (pfam01614)

Seq: LJJM01000008.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8039 PsaCFBP8039008, whole genome shotgun sequence (150088 bp)
Overview 1 RT 1: 54368-59381 bp Neighborhood of RT #1 [54368, 59383] BtuE RVT-GII GIIM Toluene_X Feature: gene Location: 54368-54922 bp Feature: domain Description: BtuE Location: 54485-54908 bp Feature: domain Description: BtuE Location: 54485-54908 bp Feature: gene Location: 55452-55940 bp Feature: gene Location: 55975-57342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56308-56923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56308-5692 3 bp Feature: domain Description: GIIM Note: maturase Location: 56980-57208 bp Feature: domain Description: GIIM Note: maturase Location: 56980-572 08 bp Feature: gene Location: 57673-58023 bp Feature: gene Location: 58100-59383 bp Feature: domain Description: Toluene_X Location: 58157-59381 bp Feature: domain Description: Toluene_X Location: 58157-59381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BtuE (COG0386), RVT-GII, GIIM (pfam08388), Toluene_X (pfam03349)

Seq: LJJM01000013.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8039 PsaCFBP8039013, whole genome shotgun sequence (131873 bp)
Overview 1 RT 1: 127205-131606 bp Neighborhood of RT #1 [127205, 131767] PRK13557 HopW1-1 RVT-GII Zn_Tnp_IS91 Feature: gene Location: 127205-127414 bp Feature: domain Description: PRK13557 Location: 127226-127367 bp Feature: domain Description: PRK13 557 Location: 127226-1273 67 bp Feature: gene Location: 127625-129931 bp Feature: domain Description: HopW1-1 Location: 127628-128570 bp Feature: domain Description: HopW1-1 Location: 127628-128570 bp Feature: gene Location: 130145-130324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130148-130313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 0148-13 03 13 bp Feature: gene Location: 131228-131767 bp Feature: domain Description: Zn_Tnp_IS91 Location: 131342-131606 bp Feature: domain Description: Zn_Tnp_IS91 Location: 13 13 42-13 1606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13557 (histidine kinase; Provisional), HopW1-1 (pfam15457), RVT-GII, Zn_Tnp_IS91 (pfam14319)

Seq: LJJM01000080.1 Pseudomonas syringae pv. actinidifoliorum strain CFBP8039 PsaCFBP8039080, whole genome shotgun sequence (4854 bp)
Overview 1 RT 1: 411-4825 bp Neighborhood of RT #1 [411, 4851] RVT-UG15 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 411-683 bp Feature: gene Location: 886-1188 bp Feature: gene Location: 1512-3158 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1959-2370 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1959-2370 bp Feature: gene Location: 3463-4851 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3466-3637 bp Feature: domain Description: LZ_Tnp_IS66 Location: 34 66-3637 bp Feature: domain Description: zf-IS66 Location: 3667-3790 bp Feature: domain Description: zf-IS66 Location: 3667-3790 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3835-4690 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3835-4 690 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4711-4825 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4 711-4 825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)