myRT

myRT report for GCA_001499735.1_Thiocapsa_sp._KS1

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Seq: LN848257.1 Thiocapsa sp. KS1 genome assembly Thiocapsa sp. KS1, scaffold THKS1_scaffold1, whole genome shotgun sequence (5069971 bp)
Overview 1 RT 1: 1165958-1173309 bp 2 RT 2: 2352489-2354763 bp Neighborhood of RT #1 [1165958, 1173503] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III TIGR03986 TIGR03986 RAMP_I_III RAMP_I_III Neighborhood of RT #2 [2352489, 2354780] RVT-GII InsE Feature: gene Location: 1165958-1166053 bp Feature: gene Location: 1166273-1166566 bp Ori: CRI67870.1 Feature: domain Description: Cas2_I_II_III Location: 1166300-1166522 bp Feature: domain Description: Cas2_I_II_III Location: 1 1 66300-1 1 66522 bp Feature: gene Location: 1166551-1169598 bp Ori: CRI67871.1 Feature: domain Description: CRISPR_Cas6 Location: 1167280-1167439 bp Feature: domain Description: CRISPR_Cas6 Location: 1 1 67280-1 1 67439 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1167766-1168363 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 1 67766-1 1 68363 bp Feature: domain Description: Cas1_I-II-III Location: 1168630-1169566 bp Feature: domain Description: Cas1 _I-II-III Location: 1 1 68630-1 1 69566 bp Feature: gene Location: 1169595-1171988 bp Ori: CRI67872.1 Feature: domain Description: TIGR03986 Location: 1169616-1170027 bp Feature: domain Description: TIGR03986 Location: 1 1 6961 6-1 1 70027 bp Feature: domain Description: TIGR03986 Location: 1170585-1171566 bp Feature: domain Description: TIGR03986 Location: 1 1 70585-1 1 71 566 bp Feature: gene Location: 1172007-1173503 bp Ori: CRI67873.1 Feature: domain Description: RAMP_I_III Location: 1172070-1172577 bp Feature: domain Description: RAMP_I_III Location: 1 1 72070-1 1 72577 bp Feature: domain Description: RAMP_I_III Location: 1172862-1173309 bp Feature: domain Description: RAMP_I_III Location: 1 1 72862-1 1 73309 bp Feature: gene Location: 2352489-2353433 bp Feature: gene Location: 2353565-2353735 bp Feature: gene Location: 2354211-2354477 bp Ori: CRI63919.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2354214-2354460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235421 4-2354460 bp Feature: gene Location: 2354390-2354554 bp Feature: gene Location: 2354589-2354780 bp Ori: CRI63921.1 Feature: domain Description: InsE Location: 2354601-2354763 bp Feature: domain Description: InsE Location: 2354601 -2354763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03986 (CRISPR-associated protein), RAMP_I_III (cl21471), RVT-GII, InsE (COG2963)