myRT

myRT report for GCA_001500235.1_ASM150023v1

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Seq: LNBU01000036.1 Pseudomonas aeruginosa 0C2E isolate RP1 scaffold_39, whole genome shotgun sequence (51830 bp)
Overview 1 RT 1: 26911-30816 bp Neighborhood of RT #1 [26911, 30816] HipB RVT-UG17 Feature: gene Location: 26911-27192 bp Ori: KUI86199.1 Feature: domain Description: HipB Location: 26932-27166 bp Feature: domain Description: HipB Location: 26932-271 66 bp Feature: gene Location: 27278-27703 bp Feature: gene Location: 28232-29596 bp Ori: KUI86201.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28460-29063 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 28460-29063 bp Feature: gene Location: 30496-30816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: LNBU01000033.1 Pseudomonas aeruginosa 0C2E isolate RP1 scaffold_36, whole genome shotgun sequence (62114 bp)
Overview 1 RT 1: 55294-61818 bp Neighborhood of RT #1 [55294, 62114] COG4271 CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 55294-56205 bp Ori: KUI86395.1 Feature: domain Description: COG4271 Location: 55519-56188 bp Feature: domain Description: COG42 71 Location: 55519-56188 bp Feature: gene Location: 56286-57830 bp Ori: KUI86390.1 Feature: domain Description: CHD Location: 56502-56916 bp Feature: domain Description: CHD Location: 56502 -56916 bp Feature: domain Description: CHD Location: 57144-57633 bp Feature: domain Description: CHD Location: 57144-57633 bp Feature: gene Location: 59825-61093 bp Ori: KUI86391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60038-60695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60038-60695 bp Feature: domain Description: GIIM Note: maturase Location: 60773-60995 bp Feature: domain Description: GIIM Note: maturase Location: 60773-60995 bp Feature: gene Location: 61482-62114 bp Ori: KUI86392.1 Feature: domain Description: DUF772 Location: 61623-61818 bp Feature: domain Description: DUF772 Location: 6162 3-61818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LNBU01000070.1 Pseudomonas aeruginosa 0C2E isolate RP1 scaffold_7, whole genome shotgun sequence (179561 bp)
Overview 1 RT 1: 94280-104586 bp 2 RT 2: 120844-129681 bp Neighborhood of RT #1 [94280, 104588] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [120844, 129710] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 94280-95401 bp Ori: KUI80552.1 Feature: domain Description: COG3177 Location: 94298-95390 bp Feature: domain Description: COG3 177 Location: 94298-953 90 bp Feature: gene Location: 95660-95797 bp Feature: gene Location: 96125-97810 bp Ori: KUI80554.1 Feature: domain Description: RVT_N Location: 96182-96422 bp Feature: domain Description: RVT_N Location: 96182-96422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96470-97106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96470-97106 bp Feature: domain Description: GIIM Note: maturase Location: 97160-97391 bp Feature: domain Description: GIIM Note: maturase Location: 97160-973 91 bp Feature: domain Description: HNH Note: nucleases Location: 97643-97781 bp Feature: domain Description: HNH Note: nucleases Location: 97643 -97781 bp Feature: gene Location: 98891-102628 bp Ori: KUI80555.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 98999-99656 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 98999-99656 bp Feature: domain Description: PRK09776 Location: 99869-100340 bp Feature: domain Description: PRK09776 Location: 99869-1003 40 bp Feature: domain Description: PAS Location: 100430-100922 bp Feature: domain Description: PAS Location: 10043 0-100922 bp Feature: domain Description: PRK10060 Location: 100931-102578 bp Feature: domain Description: PRK10060 Location: 10093 1-102578 bp Feature: gene Location: 102735-104588 bp Ori: KUI80556.1 Feature: domain Description: PRK05658 Location: 102747-104586 bp Feature: domain Description: PRK05658 Location: 102747-104586 bp Feature: gene Location: 120844-122136 bp Ori: KUI80574.1 Feature: domain Description: PRK10770 Location: 120934-122128 bp Feature: domain Description: PRK10770 Location: 12093 4-122128 bp Feature: gene Location: 122117-124906 bp Ori: KUI80575.1 Feature: domain Description: LptD Location: 122312-124892 bp Feature: domain Description: LptD Location: 1223 12-124892 bp Feature: gene Location: 125039-126751 bp Ori: KUI80576.1 Feature: domain Description: RVT_N Location: 125096-125339 bp Feature: domain Description: RVT_N Location: 125096-1253 3 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125384-126020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1253 84-126020 bp Feature: domain Description: YkfC Location: 126230-126380 bp Feature: domain Description: YkfC Location: 12623 0-1263 80 bp Feature: domain Description: HNH Note: nucleases Location: 126557-126695 bp Feature: domain Description: HNH Note: nucleases Location: 126557-126695 bp Feature: gene Location: 128023-129039 bp Ori: KUI80577.1 Feature: domain Description: COG3178 Location: 128026-129025 bp Feature: domain Description: COG3 178 Location: 128026-129025 bp Feature: gene Location: 129036-129710 bp Ori: KUI80578.1 Feature: domain Description: NTP_transferase_like_1 Location: 129042-129681 bp Feature: domain Description: NTP_transferase_like_1 Location: 129042-129681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)