myRT

myRT report for GCA_001508305.1_ASM150830v1

Download annotations/find similar RTs

Seq: LGFW01000001.1 Parcubacteria bacterium 33_209 MPI_scaffold_228, whole genome shotgun sequence (28167 bp)
Overview 1 RT 1: 12773-18524 bp Neighborhood of RT #1 [12773, 19150] O-antigen_lig Fib_succ_major RVT-UG17 GIIM degP_htrA_DO typeII_sec_gspG BID_2 BID_2 BID_2 Feature: gene Location: 12773-13462 bp Ori: KUK50165.1 Feature: domain Description: O-antigen_lig Location: 12788-13124 bp Feature: domain Description: O-antigen_lig Location: 1 2788-1 31 24 bp Feature: gene Location: 13496-14791 bp Ori: KUK50166.1 Feature: domain Description: Fib_succ_major Location: 14339-14789 bp Feature: domain Description: Fib_succ_major Location: 1 4339-1 4789 bp Feature: gene Location: 14933-16138 bp Ori: KUK50167.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 15140-15584 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 51 40-1 5584 bp Feature: domain Description: GIIM Note: maturase Location: 15629-15836 bp Feature: domain Description: GIIM Note: maturase Location: 1 5629-1 5836 bp Feature: gene Location: 16391-17422 bp Ori: KUK50168.1 Feature: domain Description: degP_htrA_DO Location: 16406-17414 bp Feature: domain Description: degP_htrA_DO Location: 1 6406-1 741 4 bp Feature: gene Location: 17426-19150 bp Ori: KUK50169.1 Feature: domain Description: typeII_sec_gspG Location: 17447-17612 bp Feature: domain Description: typeII_sec_gspG Location: 1 7447-1 761 2 bp Feature: domain Description: BID_2 Location: 17882-18038 bp Feature: domain Description: BID_2 Location: 1 7882-1 8038 bp Feature: domain Description: BID_2 Location: 18146-18275 bp Feature: domain Description: BID_2 Location: 1 81 46-1 8275 bp Feature: domain Description: BID_2 Location: 18392-18524 bp Feature: domain Description: BID_2 Location: 1 8392-1 8524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT O-antigen_lig (pfam13425), Fib_succ_major (TIGR02145), RVT-UG17, GIIM (pfam08388), degP_htrA_DO (TIGR02037), typeII_sec_gspG (TIGR01710), BID_2 (smart00635)