myRT

myRT report for GCA_001515025.1_ASM151502v1

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Seq: BBWB01000001.1 Escherichia albertii DNA, contig: K7744contig0001, strain: K7744, whole genome shotgun sequence (261201 bp)
Overview 1 RT 1: 2-4955 bp Neighborhood of RT #1 [2, 4957] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-484 bp Feature: domain Description: Caudo_TAP Location: 116-473 bp Feature: domain Description: Caudo_TAP Location: 1 1 6-473 bp Feature: gene Location: 929-2533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1220-1811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 220-1 81 1 bp Feature: domain Description: TIR_2 Location: 2138-2471 bp Feature: domain Description: TIR_2 Location: 21 38-2471 bp Feature: gene Location: 2891-3151 bp Feature: domain Description: PRK10597 Location: 2894-3134 bp Feature: domain Description: PRK1 0597 Location: 2894-31 34 bp Feature: gene Location: 3371-4957 bp Feature: domain Description: prfC Location: 3389-4955 bp Feature: domain Description: prfC Location: 3389-4955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)

Seq: BBWB01000044.1 Escherichia albertii DNA, contig: K7744contig0044, strain: K7744, whole genome shotgun sequence (19896 bp)
Overview 1 RT 1: 12902-17535 bp Neighborhood of RT #1 [12902, 17537] InsE PHA02517 RVT-GII GIIM COG4584 PRK09183 Feature: gene Location: 12902-13228 bp Feature: domain Description: InsE Location: 12905-13226 bp Feature: domain Description: InsE Location: 12 905-132 2 6 bp Feature: gene Location: 13228-13707 bp Feature: domain Description: PHA02517 Location: 13288-13642 bp Feature: domain Description: PHA02 517 Location: 132 88-13642 bp Feature: gene Location: 14299-15669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14572-15304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14572 -15304 bp Feature: domain Description: GIIM Note: maturase Location: 15379-15577 bp Feature: domain Description: GIIM Note: maturase Location: 15379-15577 bp Feature: gene Location: 15736-16758 bp Feature: domain Description: COG4584 Location: 15739-16609 bp Feature: domain Description: COG4584 Location: 15739-16609 bp Feature: gene Location: 16758-17537 bp Feature: domain Description: PRK09183 Location: 16764-17535 bp Feature: domain Description: PRK09183 Location: 16764-17535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional)