myRT

myRT report for GCA_001516045.1_41k

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Seq: LOEW01000235.1 Desulfosporosinus sp. BRH_c37 BRHa_1005521, whole genome shotgun sequence (5230 bp)
Overview 1 RT 1: 1865-4856 bp Neighborhood of RT #1 [1865, 5206] COG4584 PHA02517 RVT-GII Feature: gene Location: 1865-3340 bp Ori: KUO72655.1 Feature: domain Description: COG4584 Location: 1868-2603 bp Feature: domain Description: COG4584 Location: 1 868-2603 bp Feature: gene Location: 3497-3874 bp Ori: KUO72656.1 Feature: domain Description: PHA02517 Location: 3500-3833 bp Feature: domain Description: PHA0251 7 Location: 3500-3833 bp Feature: gene Location: 4595-5206 bp Ori: KUO72657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4628-4856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4628-4856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: LOEW01000240.1 Desulfosporosinus sp. BRH_c37 BRHa_1005638, whole genome shotgun sequence (64856 bp)
Overview 1 RT 1: 25683-32815 bp Neighborhood of RT #1 [25683, 32844] RVT-GII PRK05182 ExeA Feature: gene Location: 25683-26120 bp Feature: gene Location: 26270-26998 bp Feature: gene Location: 27207-29096 bp Ori: KUO72331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27528-28230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 752 8-2 82 30 bp Feature: gene Location: 30404-31345 bp Ori: KUO72332.1 Feature: domain Description: PRK05182 Location: 30416-31331 bp Feature: domain Description: PRK05182 Location: 30416-31331 bp Feature: gene Location: 32047-32844 bp Ori: KUO72333.1 Feature: domain Description: ExeA Location: 32062-32815 bp Feature: domain Description: ExeA Location: 32 062 -32 815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK05182 (DNA-directed RNA polymerase subunit alpha; Provisional), ExeA (COG3267)

Seq: LOEW01000177.1 Desulfosporosinus sp. BRH_c37 BRHa_1004188, whole genome shotgun sequence (10510 bp)
Overview 1 RT 1: 8349-10167 bp Neighborhood of RT #1 [8349, 10214] DsrA RVT-Retrons Feature: gene Location: 8349-9263 bp Ori: KUO74604.1 Feature: domain Description: DsrA Location: 8379-9240 bp Feature: domain Description: DsrA Location: 83 79-9240 bp Feature: gene Location: 9321-9557 bp Feature: gene Location: 9723-10214 bp Ori: KUO74606.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9942-10167 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9942-10167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DsrA (COG2221), RVT-Retrons

Seq: LOEW01000089.1 Desulfosporosinus sp. BRH_c37 BRHa_1002262, whole genome shotgun sequence (5903 bp)
Overview 1 RT 1: 2005-5702 bp Neighborhood of RT #1 [2005, 5806] DUF3883 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2005-2256 bp Feature: gene Location: 2363-3235 bp Ori: KUO77784.1 Feature: domain Description: DUF3883 Location: 2600-2867 bp Feature: domain Description: DUF3883 Location: 2600-2867 bp Feature: gene Location: 4028-5806 bp Ori: KUO77785.1 Feature: domain Description: RVT_N Location: 4082-4328 bp Feature: domain Description: RVT_N Location: 4 082-4 328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4382-5042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 382-504 2 bp Feature: domain Description: GIIM Note: maturase Location: 5105-5339 bp Feature: domain Description: GIIM Note: maturase Location: 5105-5339 bp Feature: domain Description: HNHc Note: nucleases Location: 5543-5702 bp Feature: domain Description: HNHc Note: nucleases Location: 554 3-5702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3883 (pfam13020), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LOEW01000258.1 Desulfosporosinus sp. BRH_c37 BRHa_1006182, whole genome shotgun sequence (18730 bp)
Overview 1 RT 1: 15370-18606 bp Neighborhood of RT #1 [15370, 18659] WrbA RVT-GII Feature: gene Location: 15370-15969 bp Ori: KUO71625.1 Feature: domain Description: WrbA Location: 15373-15925 bp Feature: domain Description: WrbA Location: 15 373-15 925 bp Feature: gene Location: 16964-17275 bp Feature: gene Location: 17688-18659 bp Ori: KUO71627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17961-18606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17961-18606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WrbA (COG0655), RVT-GII

Seq: LOEW01000138.1 Desulfosporosinus sp. BRH_c37 BRHa_1003365, whole genome shotgun sequence (16424 bp)
Overview 1 RT 1: 11704-15556 bp Neighborhood of RT #1 [11704, 16356] DUF1848 Recombinase Zn_ribbon_recom RVT-GII Feature: gene Location: 11704-12630 bp Ori: KUO76010.1 Feature: domain Description: DUF1848 Location: 11710-12487 bp Feature: domain Description: DUF1848 Location: 11710-12487 bp Feature: gene Location: 12967-13866 bp Ori: KUO76011.1 Feature: domain Description: Recombinase Location: 13003-13114 bp Feature: domain Description: Recombinase Location: 13003-13114 bp Feature: domain Description: Zn_ribbon_recom Location: 13177-13351 bp Feature: domain Description: Zn_ribbon_recom Location: 13177-13351 bp Feature: gene Location: 14545-16356 bp Ori: KUO76012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14854-15556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14854-15556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1848 (pfam08902), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII