myRT

myRT report for GCA_001516055.1_41k

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Seq: LOEZ01000089.1 Gracilibacter sp. BRH_c7a BRHa_1006463, whole genome shotgun sequence (5898 bp)
Overview 1 RT 1: 1-2810 bp Neighborhood of RT #1 [1, 2810] RVT-GII GIIM Feature: gene Location: 1-540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6-1 09 bp Feature: domain Description: GIIM Note: maturase Location: 151-382 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 -382 bp Feature: gene Location: 821-2110 bp Feature: gene Location: 2304-2810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOEZ01000079.1 Gracilibacter sp. BRH_c7a BRHa_1005671, whole genome shotgun sequence (20862 bp)
Overview 1 RT 1: 8593-17568 bp Neighborhood of RT #1 [8593, 17864] HsdM hsdR RVT-UG19 HTH_XRE ImmA Feature: gene Location: 8593-10017 bp Ori: KUO59702.1 Feature: domain Description: HsdM Location: 8602-9967 bp Feature: domain Description: HsdM Location: 8602 -9967 bp Feature: gene Location: 10020-13241 bp Ori: KUO59703.1 Gene: hsdR Feature: domain Description: hsdR Location: 10023-13230 bp Feature: domain Description: hsdR Location: 1002 3-132 30 bp Feature: gene Location: 13490-15571 bp Ori: KUO59704.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 13856-14348 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 13856-14348 bp Feature: gene Location: 16413-16649 bp Feature: gene Location: 16716-17864 bp Ori: KUO59706.1 Feature: domain Description: HTH_XRE Location: 16737-16908 bp Feature: domain Description: HTH_XRE Location: 16737-16908 bp Feature: domain Description: ImmA Location: 17121-17568 bp Feature: domain Description: ImmA Location: 1712 1-17568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), hsdR (TIGR00348), RVT-UG19, HTH_XRE (smart00530), ImmA (COG2856)

Seq: LOEZ01000078.1 Gracilibacter sp. BRH_c7a BRHa_1005528, whole genome shotgun sequence (7832 bp)
Overview 1 RT 1: 177-4302 bp Neighborhood of RT #1 [177, 4766] HD RVT-GII GIIM DUF2971 DUF4365 Feature: gene Location: 177-668 bp Ori: KUO59795.1 Feature: domain Description: HD Location: 240-516 bp Feature: domain Description: HD Location: 240-516 bp Feature: gene Location: 819-2171 bp Ori: KUO59796.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137-1782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 7-1782 bp Feature: domain Description: GIIM Note: maturase Location: 1863-2076 bp Feature: domain Description: GIIM Note: maturase Location: 1863 -2076 bp Feature: gene Location: 2840-3703 bp Ori: KUO59797.1 Feature: domain Description: DUF2971 Location: 3230-3491 bp Feature: domain Description: DUF2971 Location: 3 23 0-3 491 bp Feature: gene Location: 3870-4766 bp Ori: KUO59798.1 Feature: domain Description: DUF4365 Location: 3942-4302 bp Feature: domain Description: DUF43 65 Location: 3 942-43 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HD (pfam01966), RVT-GII, GIIM (pfam08388), DUF2971 (pfam11185), DUF4365 (pfam14280)

Seq: LOEZ01000076.1 Gracilibacter sp. BRH_c7a BRHa_1005394, whole genome shotgun sequence (47968 bp)
Overview 1 RT 1: 22427-28671 bp Neighborhood of RT #1 [22427, 28676] DMSO_dmsB DmsC RVT-GII MFS_YcxA_like CaiB Feature: gene Location: 22427-23005 bp Ori: KUO60031.1 Feature: domain Description: DMSO_dmsB Location: 22436-22889 bp Feature: domain Description: DMSO_dmsB Location: 224 36-22889 bp Feature: gene Location: 23009-23887 bp Ori: KUO60032.1 Feature: domain Description: DmsC Location: 23012-23861 bp Feature: domain Description: DmsC Location: 23012-23861 bp Feature: gene Location: 25298-25630 bp Ori: KUO60033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25547-25616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2554 7-25616 bp Feature: gene Location: 26304-27590 bp Ori: KUO60034.1 Feature: domain Description: MFS_YcxA_like Location: 26346-27525 bp Feature: domain Description: MFS_YcxA_like Location: 2634 6-27525 bp Feature: gene Location: 27612-28676 bp Ori: KUO60035.1 Feature: domain Description: CaiB Location: 27618-28671 bp Feature: domain Description: CaiB Location: 27618-28671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DMSO_dmsB (TIGR02951), DmsC (pfam04976), RVT-GII, MFS_YcxA_like (cd17355), CaiB (COG1804)

Seq: LOEZ01000093.1 Gracilibacter sp. BRH_c7a BRHa_1007173, whole genome shotgun sequence (5996 bp)
Overview 1 RT 1: 750-5482 bp Neighborhood of RT #1 [750, 5886] group_II_RT_mat RVT-GII GIIM RVT-GII DUF772 Feature: gene Location: 750-959 bp Feature: gene Location: 1105-1584 bp Ori: KUO58191.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1111-1492 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1111-1492 bp Feature: gene Location: 1720-2967 bp Ori: KUO58192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924-2581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924-25 81 bp Feature: domain Description: GIIM Note: maturase Location: 2662-2881 bp Feature: domain Description: GIIM Note: maturase Location: 2662-2881 bp Feature: gene Location: 3456-4454 bp Ori: KUO58193.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3723-4395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3723-4395 bp Feature: gene Location: 5074-5886 bp Ori: KUO58194.1 Feature: domain Description: DUF772 Location: 5281-5482 bp Feature: domain Description: DUF772 Location: 5 281-5 482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)