myRT

myRT report for GCA_001517445.1_C105KS015

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Seq: FBWN01000263.1 Clostridium sp. C105KSO15 genome assembly C105KS015, contig {contig263}, whole genome shotgun sequence (108035 bp)
Overview 1 RT 1: 4101-9047 bp Neighborhood of RT #1 [4101, 9118] COG4331 SRAP RVT-GII GIIM PRK03103 Feature: gene Location: 4101-4580 bp Feature: domain Description: COG4331 Location: 4125-4575 bp Feature: domain Description: COG4331 Location: 41 25-4575 bp Feature: gene Location: 4614-5195 bp Feature: domain Description: SRAP Location: 4617-5118 bp Feature: domain Description: SRAP Location: 461 7-51 1 8 bp Feature: gene Location: 5248-6660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5599-6217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5599-621 7 bp Feature: domain Description: GIIM Note: maturase Location: 6274-6499 bp Feature: domain Description: GIIM Note: maturase Location: 6274-6499 bp Feature: gene Location: 7143-7730 bp Feature: gene Location: 7856-9118 bp Feature: domain Description: PRK03103 Location: 7859-9047 bp Feature: domain Description: PRK031 03 Location: 7859-9047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4331 (Uncharacterized membrane protein ), SRAP (pfam02586), RVT-GII, GIIM (pfam08388), PRK03103 (DNA polymerase IV; Reviewed)

Seq: FBWN01000166.1 Clostridium sp. C105KSO15 genome assembly C105KS015, contig {contig166}, whole genome shotgun sequence (15125 bp)
Overview 1 RT 1: 10665-13872 bp Neighborhood of RT #1 [10665, 13877] RVT-GII GIIM RVT-GII Feature: gene Location: 10665-10874 bp Feature: gene Location: 11078-11740 bp Feature: gene Location: 12562-13284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12565-12922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 565-12 92 2 bp Feature: domain Description: GIIM Note: maturase Location: 12985-13210 bp Feature: domain Description: GIIM Note: maturase Location: 12 985-132 10 bp Feature: gene Location: 13308-13877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13569-13872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13569-13872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FBWN01000059.1 Clostridium sp. C105KSO15 genome assembly C105KS015, contig {contig59}, whole genome shotgun sequence (46599 bp)
Overview 1 RT 1: 33596-38733 bp Neighborhood of RT #1 [33596, 39014] RVT-GII GIIM GIIM AbiEii COG5340 Feature: gene Location: 33596-34156 bp Feature: gene Location: 34153-35058 bp Feature: gene Location: 35213-36649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35441-36062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5441-3 6062 bp Feature: domain Description: GIIM Note: maturase Location: 36140-36254 bp Feature: domain Description: GIIM Note: maturase Location: 3 6140-3 6254 bp Feature: domain Description: GIIM Note: maturase Location: 36323-36422 bp Feature: domain Description: GIIM Note: maturase Location: 3 63 23 -3 6422 bp Feature: gene Location: 37358-38365 bp Feature: domain Description: AbiEii Location: 37478-38210 bp Feature: domain Description: AbiEii Location: 3 7478-3 8210 bp Feature: gene Location: 38346-39014 bp Feature: domain Description: COG5340 Location: 38493-38733 bp Feature: domain Description: COG53 40 Location: 3 8493 -3 873 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )

Seq: FBWN01000233.1 Clostridium sp. C105KSO15 genome assembly C105KS015, contig {contig233}, whole genome shotgun sequence (54062 bp)
Overview 1 RT 1: 45907-52306 bp Neighborhood of RT #1 [45907, 52395] DUF3852 RVT-GII DUF5131 Feature: gene Location: 45907-47640 bp Feature: gene Location: 47728-48003 bp Feature: domain Description: DUF3852 Location: 47734-47992 bp Feature: domain Description: DUF3852 Location: 4 7734 -4 7992 bp Feature: gene Location: 48731-50602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49046-49772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 904 6-4 9772 bp Feature: gene Location: 50930-51277 bp Feature: gene Location: 51673-52395 bp Feature: domain Description: DUF5131 Location: 51679-52306 bp Feature: domain Description: DUF5131 Location: 51679-52306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3852 (pfam12963), RVT-GII, DUF5131 (pfam07505)

Seq: FBWN01000243.1 Clostridium sp. C105KSO15 genome assembly C105KS015, contig {contig243}, whole genome shotgun sequence (62445 bp)
Overview 1 RT 1: 33248-40127 bp Neighborhood of RT #1 [33248, 40186] PRK06545 PRK08673 RVT-Retrons YesN YesN YesM Feature: gene Location: 33248-34345 bp Feature: domain Description: PRK06545 Location: 33263-34319 bp Feature: domain Description: PRK065 45 Location: 33263-34319 bp Feature: gene Location: 34345-35358 bp Feature: domain Description: PRK08673 Location: 34351-35350 bp Feature: domain Description: PRK08673 Location: 3435 1-35 35 0 bp Feature: gene Location: 35782-36789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35947-36502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35 947-365 02 bp Feature: gene Location: 36768-38375 bp Feature: domain Description: YesN Location: 36789-37416 bp Feature: domain Description: YesN Location: 36789-37416 bp Feature: domain Description: YesN Location: 37899-38337 bp Feature: domain Description: YesN Location: 37899-38337 bp Feature: gene Location: 38372-40186 bp Feature: domain Description: YesM Location: 38993-40127 bp Feature: domain Description: YesM Location: 38993-40127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06545 (prephenate dehydrogenase; Validated), PRK08673 (3-deoxy-7-phosphoheptulonate synthase; Reviewed), RVT-Retrons, YesN (COG4753), YesM (COG2972)