myRT

myRT report for GCA_001517465.1_C105KES14_ass

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Seq: FBWO01000329.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig329}, whole genome shotgun sequence (7010 bp)
Overview 1 RT 1: 68-2970 bp Neighborhood of RT #1 [68, 3095] RVT-Retrons RVT-Retrons SAP 2A0121 Feature: gene Location: 68-517 bp Ori: CUX76007.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 359-512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 359-51 2 bp Feature: gene Location: 540-872 bp Ori: CUX76008.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 552-627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 552-627 bp Feature: gene Location: 1079-1648 bp Ori: CUX76009.1 Feature: domain Description: SAP Location: 1346-1442 bp Feature: domain Description: SAP Location: 1 346-1 442 bp Feature: gene Location: 1845-3095 bp Ori: CUX76010.1 Feature: domain Description: 2A0121 Location: 1881-2970 bp Feature: domain Description: 2A01 21 Location: 1 881 -2970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SAP (smart00513), 2A0121 (TIGR00900)

Seq: FBWO01000333.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig333}, whole genome shotgun sequence (1890 bp)
Overview 1 RT 1: 73-1279 bp Neighborhood of RT #1 [73, 1464] RVT-GII GIIM Feature: gene Location: 73-1464 bp Ori: CUX76018.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1012 bp Feature: domain Description: GIIM Note: maturase Location: 1069-1279 bp Feature: domain Description: GIIM Note: maturase Location: 1069-12 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FBWO01000274.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig274}, whole genome shotgun sequence (25135 bp)
Overview 1 RT 1: 3463-10120 bp Neighborhood of RT #1 [3463, 10120] FlhG pilus_cpaB RVT-GII Intron_maturas2 Feature: gene Location: 3463-4293 bp Ori: CUX74935.1 Feature: domain Description: FlhG Location: 3466-3934 bp Feature: domain Description: FlhG Location: 3 466-3 93 4 bp Feature: gene Location: 4314-5138 bp Ori: CUX74936.1 Feature: domain Description: pilus_cpaB Location: 4350-5025 bp Feature: domain Description: pilus_cpaB Location: 43 50-5025 bp Feature: gene Location: 5763-7580 bp Ori: CUX74937.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6027-6858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6027-6858 bp Feature: domain Description: Intron_maturas2 Location: 6930-7236 bp Feature: domain Description: Intron_maturas2 Location: 693 0-723 6 bp Feature: gene Location: 8120-9739 bp Feature: gene Location: 9959-10120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlhG (COG0455), pilus_cpaB (TIGR03177), RVT-GII, Intron_maturas2 (pfam01348)

Seq: FBWO01000117.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig117}, whole genome shotgun sequence (8221 bp)
Overview 1 RT 1: 4011-7946 bp Neighborhood of RT #1 [4011, 8116] group_II_RT_mat RVT-GII RVT-GII TrmA DUF262 Feature: gene Location: 4011-4325 bp Feature: gene Location: 4916-5113 bp Ori: CUX72492.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4952-5096 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4 952-5096 bp Feature: gene Location: 5198-5413 bp Ori: CUX72493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5219-5396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5219-5396 bp Feature: gene Location: 5394-5729 bp Ori: CUX72494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5409-5649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 09-564 9 bp Feature: gene Location: 6141-7550 bp Ori: CUX72495.1 Gene: rlmCD_2 Feature: domain Description: TrmA Location: 6150-7500 bp Feature: domain Description: TrmA Location: 6150-7500 bp Feature: gene Location: 7622-8116 bp Ori: CUX72496.1 Feature: domain Description: DUF262 Location: 7676-7946 bp Feature: domain Description: DUF262 Location: 7676-794 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, TrmA (COG2265), DUF262 (pfam03235)

Seq: FBWO01000208.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig208}, whole genome shotgun sequence (88879 bp)
Overview 1 RT 1: 55985-63851 bp Neighborhood of RT #1 [55985, 63952] Spr RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type PrgI Feature: gene Location: 55985-57955 bp Ori: CUX74110.1 Gene: iap_5 Feature: domain Description: Spr Location: 57584-57926 bp Feature: domain Description: Spr Location: 5 75 84-5 7926 bp Feature: gene Location: 57993-58802 bp Feature: gene Location: 59179-60969 bp Ori: CUX74112.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59446-60259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 9446-6025 9 bp Feature: domain Description: Intron_maturas2 Location: 60343-60637 bp Feature: domain Description: Intron_maturas2 Location: 60343-60637 bp Feature: gene Location: 61462-63609 bp Ori: CUX74113.1 Feature: domain Description: VirB4_CagE Location: 61555-61792 bp Feature: domain Description: VirB4_CagE Location: 615 5 5 -61792 bp Feature: domain Description: TraC-F-type Location: 62230-63571 bp Feature: domain Description: TraC-F-type Location: 62230-635 71 bp Feature: gene Location: 63563-63952 bp Ori: CUX74114.1 Feature: domain Description: PrgI Location: 63578-63851 bp Feature: domain Description: PrgI Location: 635 78-6385 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), PrgI (pfam12666)

Seq: FBWO01000103.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig103}, whole genome shotgun sequence (963 bp)
Overview 1 RT 1: 31-721 bp Neighborhood of RT #1 [31, 897] RVT-GII GIIM Feature: gene Location: 31-897 bp Ori: CUX71647.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34-448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34-448 bp Feature: domain Description: GIIM Note: maturase Location: 502-721 bp Feature: domain Description: GIIM Note: maturase Location: 502-721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FBWO01000209.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig209}, whole genome shotgun sequence (4319 bp)
Overview 1 RT 1: 296-3569 bp Neighborhood of RT #1 [296, 3574] RVT-GII GIIM PRK07116 SpoU Feature: gene Location: 296-1594 bp Ori: CUX74145.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551-1241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551-1241 bp Feature: domain Description: GIIM Note: maturase Location: 1319-1517 bp Feature: domain Description: GIIM Note: maturase Location: 1319-1517 bp Feature: gene Location: 2223-2513 bp Ori: CUX74146.1 Feature: domain Description: PRK07116 Location: 2229-2475 bp Feature: domain Description: PRK07 116 Location: 2229-247 5 bp Feature: gene Location: 2750-3574 bp Ori: CUX74147.1 Feature: domain Description: SpoU Location: 2831-3569 bp Feature: domain Description: SpoU Location: 2831-3569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK07116 (flavodoxin; Provisional), SpoU (COG0566)

Seq: FBWO01000201.1 Clostridium sp. C105KSO14 genome assembly C105KES14 ass, contig {contig201}, whole genome shotgun sequence (19367 bp)
Overview 1 RT 1: 14682-19114 bp Neighborhood of RT #1 [14682, 19188] Transposase_20 DEDD_Tnp_IS110 RVT-GII Intron_maturas2 HNHc DEDD_Tnp_IS110 AlsT Feature: gene Location: 14682-15059 bp Ori: CUX74024.1 Feature: domain Description: Transposase_20 Location: 14742-14991 bp Feature: domain Description: Transposase_20 Location: 14742-14991 bp Feature: gene Location: 15035-15472 bp Ori: CUX74025.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 15047-15290 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 15047-15290 bp Feature: gene Location: 15612-17399 bp Ori: CUX74026.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15876-16701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158 76-16701 bp Feature: domain Description: Intron_maturas2 Location: 16776-17082 bp Feature: domain Description: Intron_maturas2 Location: 16776-1708 2 bp Feature: domain Description: HNHc Note: nucleases Location: 17223-17373 bp Feature: domain Description: HNHc Note: nucleases Location: 17223-17373 bp Feature: gene Location: 17899-18174 bp Ori: CUX74027.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 17959-18160 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 17959-18 160 bp Feature: gene Location: 18259-19188 bp Ori: CUX74028.1 Gene: alsT_3 Feature: domain Description: AlsT Location: 18265-19114 bp Feature: domain Description: AlsT Location: 18 265-19114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AlsT (COG1115)