myRT

myRT report for GCA_001517625.2_Clostridium_bouchedurhonense

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Seq: LN999826.1 Clostridium sp. AT5 genome assembly, scaffold scaffold00005, whole genome shotgun sequence (267020 bp)
Overview 1 RT 1: 179451-183761 bp Neighborhood of RT #1 [179451, 183859] InsE PHA02517 RVT-GII HTH_XRE DNA_ligase_A_N RepA_N Feature: gene Location: 179451-179792 bp Feature: domain Description: InsE Location: 179466-179781 bp Feature: domain Description: InsE Location: 1 79466-1 79781 bp Feature: gene Location: 179792-180697 bp Feature: domain Description: PHA02517 Location: 179861-180686 bp Feature: domain Description: PHA0251 7 Location: 1 79861 -1 80686 bp Feature: gene Location: 180890-181867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180893-181517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 80893-1 81 51 7 bp Feature: gene Location: 182043-182849 bp Feature: domain Description: HTH_XRE Location: 182070-182241 bp Feature: domain Description: HTH_XRE Location: 1 82070-1 82241 bp Feature: domain Description: DNA_ligase_A_N Location: 182574-182820 bp Feature: domain Description: DNA_ligase_A_N Location: 1 82574-1 82820 bp Feature: gene Location: 183518-183859 bp Feature: domain Description: RepA_N Location: 183599-183761 bp Feature: domain Description: RepA_N Location: 1 83599-1 83761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), RepA_N (pfam06970)

Seq: LN999828.1 Clostridium sp. AT5 genome assembly, scaffold scaffold00007, whole genome shotgun sequence (2148528 bp)
Overview 1 RT 1: 1158089-1161082 bp 2 RT 2: 1214951-1218499 bp 3 RT 3: 1442290-1454405 bp Neighborhood of RT #1 [1158089, 1161501] M14_ASTE_ASPA-like group_II_RT_mat RVT-GII Cthe_2159 Neighborhood of RT #2 [1214951, 1218504] TraG-D_C RVT-GII RVT-GII LysR SDR_subfam_1 Neighborhood of RT #3 [1442290, 1454419] COG4646 HepA RVT-GII DUF3849 YtxK COG4646 Feature: gene Location: 1158089-1159021 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 1158179-1158755 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 1158179-1158755 bp Feature: gene Location: 1159525-1159833 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1159672-1159831 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1159672 -1159831 bp Feature: gene Location: 1159861-1160013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159864-1159999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159864-1159999 bp Feature: gene Location: 1160124-1160468 bp Feature: gene Location: 1160752-1161501 bp Feature: domain Description: Cthe_2159 Location: 1160758-1161082 bp Feature: domain Description: Cthe_2 159 Location: 1160758-1161082 bp Feature: gene Location: 1214951-1215361 bp Feature: gene Location: 1215401-1215658 bp Feature: domain Description: TraG-D_C Location: 1215494-1215629 bp Feature: domain Description: TraG-D_C Location: 12 15494-12 1562 9 bp Feature: gene Location: 1215953-1216294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216037-1216292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 16037-12 162 92 bp Feature: gene Location: 1216322-1216519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216328-1216481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1632 8-12 16481 bp Feature: gene Location: 1216664-1217548 bp Feature: domain Description: LysR Location: 1216667-1217546 bp Feature: domain Description: LysR Location: 12 16667-12 17546 bp Feature: gene Location: 1217722-1218504 bp Feature: domain Description: SDR_subfam_1 Location: 1217731-1218499 bp Feature: domain Description: SDR_subfam_1 Location: 12 17731-12 18499 bp Feature: gene Location: 1442290-1442484 bp Feature: gene Location: 1442609-1444726 bp Feature: domain Description: COG4646 Location: 1442657-1443233 bp Feature: domain Description: COG4646 Location: 1442 657-14432 33 bp Feature: domain Description: HepA Location: 1443572-1443761 bp Feature: domain Description: HepA Location: 1443572 -1443761 bp Feature: gene Location: 1444864-1446759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1445158-1445872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1445158-1445872 bp Feature: gene Location: 1446906-1447250 bp Feature: gene Location: 1447499-1454419 bp Feature: domain Description: DUF3849 Location: 1450358-1450688 bp Feature: domain Description: DUF3849 Location: 1450358-1450688 bp Feature: domain Description: YtxK Location: 1451621-1452350 bp Feature: domain Description: YtxK Location: 145162 1-1452 350 bp Feature: domain Description: COG4646 Location: 1452422-1454405 bp Feature: domain Description: COG4646 Location: 1452 42 2 -1454405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M14_ASTE_ASPA-like (cd06910), group_II_RT_mat (TIGR04416), RVT-GII, Cthe_2159 (pfam14262), TraG-D_C (pfam12696), LysR (COG0583), SDR_subfam_1 (TIGR03971), COG4646 (Adenine-specific DNA methylase, N12 class ), HepA (COG0553), DUF3849 (pfam12960)
YtxK (COG0827)