myRT

myRT report for GCA_001518355.1_ASM151835v1

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Seq: LQZV01000146.1 Escherichia coli strain GN02748 GCID_ECOLID_00113_NODE_23.ctg_1, whole genome shotgun sequence (53449 bp)
Overview 1 RT 1: 2738-7813 bp Neighborhood of RT #1 [2738, 8514] PRK10870 PRK09692 RVT-Retrons ABC_ATPase Relaxase Feature: gene Location: 2738-3262 bp Feature: domain Description: PRK10870 Location: 2801-3254 bp Feature: domain Description: PRK1 0870 Location: 2801 -3254 bp Feature: gene Location: 3697-4035 bp Feature: domain Description: PRK09692 Location: 3706-4027 bp Feature: domain Description: PRK09692 Location: 3706-4027 bp Feature: gene Location: 4638-5588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4785-5313 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4785-531 3 bp Feature: gene Location: 5585-6949 bp Feature: domain Description: ABC_ATPase Location: 5633-6341 bp Feature: domain Description: ABC_ATPase Location: 5633-6341 bp Feature: gene Location: 7054-8514 bp Feature: domain Description: Relaxase Location: 7081-7813 bp Feature: domain Description: Relaxase Location: 7081 -781 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10870 (transcriptional repressor MprA; Provisional), PRK09692 (Integrase; provisional), RVT-Retrons, ABC_ATPase (pfam09818), Relaxase (pfam03432)

Seq: LQZV01000111.1 Escherichia coli strain GN02748 GCID_ECOLID_00113_NODE_199.ctg_1, whole genome shotgun sequence (1815 bp)
Overview 1 RT 1: 71-1570 bp Neighborhood of RT #1 [71, 1815] PHA02517 RVT-GII GIIM Feature: gene Location: 71-460 bp Feature: domain Description: PHA02517 Location: 74-416 bp Feature: domain Description: PHA02 517 Location: 74-416 bp Feature: gene Location: 544-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-12 97 bp Feature: domain Description: GIIM Note: maturase Location: 1372-1570 bp Feature: domain Description: GIIM Note: maturase Location: 1372 -1570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LQZV01000130.1 Escherichia coli strain GN02748 GCID_ECOLID_00113_NODE_215.ctg_1, whole genome shotgun sequence (1157 bp)
Overview 1 RT 1: 1-994 bp Neighborhood of RT #1 [1, 994] RVT-GII Feature: gene Location: 1-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 283-708 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII