myRT

myRT report for GCA_001519125.1_ASM151912v1

Download annotations/find similar RTs

Seq: LQRX01000151.1 Escherichia coli strain GN02009 GCID_ECOLID_00004_NODE_99.ctg_1, whole genome shotgun sequence (1768 bp)
Overview 1 RT 1: 1-1701 bp Neighborhood of RT #1 [1, 1745] RVT-GII GIIM PHA02517 Feature: gene Location: 1-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1 027 bp Feature: gene Location: 1356-1745 bp Feature: domain Description: PHA02517 Location: 1359-1701 bp Feature: domain Description: PHA0251 7 Location: 1 359-1 701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LQRX01000068.1 Escherichia coli strain GN02009 GCID_ECOLID_00004_NODE_23.ctg_1, whole genome shotgun sequence (89387 bp)
Overview 1 RT 1: 28038-33113 bp Neighborhood of RT #1 [28038, 33814] PRK10870 PRK09692 RVT-Retrons ABC_ATPase Relaxase Feature: gene Location: 28038-28562 bp Feature: domain Description: PRK10870 Location: 28101-28554 bp Feature: domain Description: PRK10870 Location: 2 8101-2 8554 bp Feature: gene Location: 28997-29335 bp Feature: domain Description: PRK09692 Location: 29006-29327 bp Feature: domain Description: PRK09692 Location: 2 9006-2 932 7 bp Feature: gene Location: 29938-30888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30085-30613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30085-30613 bp Feature: gene Location: 30885-32249 bp Feature: domain Description: ABC_ATPase Location: 30933-31641 bp Feature: domain Description: ABC_ATPase Location: 30933-31641 bp Feature: gene Location: 32354-33814 bp Feature: domain Description: Relaxase Location: 32381-33113 bp Feature: domain Description: Relaxase Location: 32 381-33113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10870 (transcriptional repressor MprA; Provisional), PRK09692 (Integrase; provisional), RVT-Retrons, ABC_ATPase (pfam09818), Relaxase (pfam03432)

Seq: LQRX01000010.1 Escherichia coli strain GN02009 GCID_ECOLID_00004_NODE_107.ctg_1, whole genome shotgun sequence (1236 bp)
Overview 1 RT 1: 1-994 bp Neighborhood of RT #1 [1, 994] RVT-GII Feature: gene Location: 1-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 283-708 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII