myRT

myRT report for GCA_001519215.1_ASM151921v1

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Seq: LQRY01000102.1 Escherichia coli strain GN02045 GCID_ECOLID_00006_NODE_82.ctg_1, whole genome shotgun sequence (1815 bp)
Overview 1 RT 1: 71-1570 bp Neighborhood of RT #1 [71, 1815] PHA02517 RVT-GII GIIM Feature: gene Location: 71-460 bp Feature: domain Description: PHA02517 Location: 74-416 bp Feature: domain Description: PHA0251 7 Location: 74-41 6 bp Feature: gene Location: 544-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1 297 bp Feature: domain Description: GIIM Note: maturase Location: 1372-1570 bp Feature: domain Description: GIIM Note: maturase Location: 1 372-1 570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LQRY01000036.1 Escherichia coli strain GN02045 GCID_ECOLID_00006_NODE_22.ctg_1, whole genome shotgun sequence (89419 bp)
Overview 1 RT 1: 28038-33145 bp Neighborhood of RT #1 [28038, 33846] PRK10870 PRK09692 RVT-Retrons ABC_ATPase Relaxase Feature: gene Location: 28038-28562 bp Feature: domain Description: PRK10870 Location: 28101-28554 bp Feature: domain Description: PRK10870 Location: 2 8101-2 8554 bp Feature: gene Location: 28997-29335 bp Feature: domain Description: PRK09692 Location: 29006-29327 bp Feature: domain Description: PRK09692 Location: 2 9006-2 932 7 bp Feature: gene Location: 29970-30920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30117-30645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30117-30645 bp Feature: gene Location: 30917-32281 bp Feature: domain Description: ABC_ATPase Location: 30965-31673 bp Feature: domain Description: ABC_ATPase Location: 30965-31673 bp Feature: gene Location: 32386-33846 bp Feature: domain Description: Relaxase Location: 32413-33145 bp Feature: domain Description: Relaxase Location: 32 413-33145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10870 (transcriptional repressor MprA; Provisional), PRK09692 (Integrase; provisional), RVT-Retrons, ABC_ATPase (pfam09818), Relaxase (pfam03432)

Seq: LQRY01000107.1 Escherichia coli strain GN02045 GCID_ECOLID_00006_NODE_87.ctg_1, whole genome shotgun sequence (1157 bp)
Overview 1 RT 1: 1-994 bp Neighborhood of RT #1 [1, 994] RVT-GII Feature: gene Location: 1-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 283-708 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII