myRT

myRT report for GCA_001519245.1_ASM151924v1

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Seq: LQSU01000174.1 Escherichia coli strain GN02277 GCID_ECOLID_00030_NODE_29.ctg_1, whole genome shotgun sequence (58508 bp)
Overview 1 RT 1: 22420-28451 bp Neighborhood of RT #1 [22420, 28588] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22420-22560 bp Ori: KUT10317.1 Feature: domain Description: SfsB Location: 22429-22501 bp Feature: domain Description: SfsB Location: 22429-22501 bp Feature: gene Location: 22557-23027 bp Feature: gene Location: 23374-26583 bp Ori: KUT10319.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: gene Location: 26878-27681 bp Ori: KUT10320.1 Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3_N Location: 2691 1 -271 72 bp Feature: domain Description: AbiEi_3 Location: 27184-27640 bp Feature: domain Description: AbiEi_3 Location: 271 84-27640 bp Feature: gene Location: 27668-28588 bp Ori: KUT10321.1 Feature: domain Description: AbiEii Location: 27710-28451 bp Feature: domain Description: AbiEii Location: 2771 0-28451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: LQSU01000184.1 Escherichia coli strain GN02277 GCID_ECOLID_00030_NODE_38.ctg_1, whole genome shotgun sequence (49414 bp)
Overview 1 RT 1: 19860-25263 bp Neighborhood of RT #1 [19860, 25271] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 19860-20777 bp Ori: KUT09227.1 Feature: domain Description: PFLE_PFLC Location: 19896-20751 bp Feature: domain Description: PFLE_PFLC Location: 19896-2 0751 bp Feature: gene Location: 20914-21819 bp Feature: gene Location: 22305-22844 bp Ori: KUT09229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22635-22713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 635-2 2 713 bp Feature: gene Location: 22872-23393 bp Ori: KUT09230.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22878-23160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 878-2 3160 bp Feature: domain Description: GIIM Note: maturase Location: 23208-23388 bp Feature: domain Description: GIIM Note: maturase Location: 2 32 08-2 3388 bp Feature: gene Location: 23492-23671 bp Feature: gene Location: 24042-25271 bp Ori: KUT09232.1 Feature: domain Description: YesM Location: 24522-25263 bp Feature: domain Description: YesM Location: 2 452 2 -2 52 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: LQSU01000229.1 Escherichia coli strain GN02277 GCID_ECOLID_00030_NODE_79.ctg_1, whole genome shotgun sequence (16064 bp)
Overview 1 RT 1: 1-2122 bp 2 RT 2: 13211-15886 bp Neighborhood of RT #1 [1, 2122] RVT-GII GIIM Neighborhood of RT #2 [13211, 16064] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1-1442 bp Ori: KUT05732.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: gene Location: 1411-1836 bp Feature: gene Location: 1751-2122 bp Feature: gene Location: 13211-13537 bp Ori: KUT05729.1 Feature: domain Description: InsE Location: 13214-13535 bp Feature: domain Description: InsE Location: 13 214-13 53 5 bp Feature: gene Location: 13537-14016 bp Ori: KUT05730.1 Feature: domain Description: PHA02517 Location: 13597-13951 bp Feature: domain Description: PHA02517 Location: 13 597-13 951 bp Feature: gene Location: 14623-16064 bp Ori: KUT05731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14881-15613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14881-15613 bp Feature: domain Description: GIIM Note: maturase Location: 15688-15886 bp Feature: domain Description: GIIM Note: maturase Location: 15688-15886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LQSU01000001.1 Escherichia coli strain GN02277 GCID_ECOLID_00030_NODE_1.ctg_1, whole genome shotgun sequence (246908 bp)
Overview 1 RT 1: 170246-174601 bp Neighborhood of RT #1 [170246, 174624] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 170246-170461 bp Feature: gene Location: 170552-170833 bp Ori: KUT18138.1 Feature: domain Description: HTH_XRE Location: 170567-170732 bp Feature: domain Description: HTH_XRE Location: 170567-170732 bp Feature: gene Location: 170826-171926 bp Ori: KUT18139.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 170967-171519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 170967-171519 bp Feature: gene Location: 172003-173505 bp Ori: KUT18140.1 Feature: domain Description: PRK13889 Location: 172006-172585 bp Feature: domain Description: PRK13889 Location: 172006-172585 bp Feature: gene Location: 174313-174624 bp Ori: KUT18141.1 Feature: domain Description: TraD Location: 174427-174601 bp Feature: domain Description: TraD Location: 174 4 27-174 601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: LQSU01000143.1 Escherichia coli strain GN02277 GCID_ECOLID_00030_NODE_227.ctg_1, whole genome shotgun sequence (635 bp)
Overview 1 RT 1: 64-478 bp Neighborhood of RT #1 [64, 635] RVT-GII GIIM Feature: gene Location: 64-635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-184 bp Feature: domain Description: GIIM Note: maturase Location: 259-478 bp Feature: domain Description: GIIM Note: maturase Location: 25 9-478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)