myRT

myRT report for GCA_001519315.1_ASM151931v1

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Seq: LQSM01000031.1 Escherichia coli strain GN02183 GCID_ECOLID_00021_NODE_20.ctg_1, whole genome shotgun sequence (102123 bp)
Overview 1 RT 1: 99241-101421 bp Neighborhood of RT #1 [99241, 102074] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99241-99627 bp Feature: gene Location: 99565-100602 bp Ori: KUS70493.1 Feature: domain Description: HTH_29 Location: 99661-99832 bp Feature: domain Description: HTH_29 Location: 99661 -99832 bp Feature: domain Description: HTH_33 Location: 99865-100027 bp Feature: domain Description: HTH_33 Location: 99865-1 00027 bp Feature: domain Description: DDE_3 Location: 100069-100498 bp Feature: domain Description: DDE_3 Location: 1 00069-1 00498 bp Feature: gene Location: 100704-102074 bp Ori: KUS70494.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100965-101421 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 00965-1 01 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: LQSM01000064.1 Escherichia coli strain GN02183 GCID_ECOLID_00021_NODE_50.ctg_1, whole genome shotgun sequence (7635 bp)
Overview 1 RT 1: 751-3572 bp Neighborhood of RT #1 [751, 3577] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 751-2652 bp Ori: KUS65860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1018-1849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1018-1849 bp Feature: domain Description: Intron_maturas2 Location: 1963-2221 bp Feature: domain Description: Intron_maturas2 Location: 1963-2 2 2 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2395-2557 bp Feature: domain Description: HNHc Note: nucleases Location: 2 395-2 557 bp Feature: gene Location: 2802-3287 bp Ori: KUS65861.1 Feature: domain Description: PRK13732 Location: 2805-3285 bp Feature: domain Description: PRK13732 Location: 2 805-32 85 bp Feature: gene Location: 3344-3577 bp Ori: KUS65862.1 Feature: domain Description: DUF905 Location: 3374-3572 bp Feature: domain Description: DUF905 Location: 3374-3572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LQSM01000106.1 Escherichia coli strain GN02183 GCID_ECOLID_00021_NODE_89.ctg_1, whole genome shotgun sequence (985 bp)
Overview 1 RT 1: 1-985 bp Neighborhood of RT #1 [1, 985] RVT-GII Feature: gene Location: 1-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 283-708 bp Feature: gene Location: 623-985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LQSM01000036.1 Escherichia coli strain GN02183 GCID_ECOLID_00021_NODE_25.ctg_1, whole genome shotgun sequence (64631 bp)
Overview 1 RT 1: 1-2693 bp Neighborhood of RT #1 [1, 2704] RVT-GII GIIM PHA02517 TetR_N TetR_C_28 Feature: gene Location: 1-1272 bp Ori: KUS69913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: gene Location: 1449-1835 bp Ori: KUS69960.1 Feature: domain Description: PHA02517 Location: 1452-1833 bp Feature: domain Description: PHA02517 Location: 14 52-1833 bp Feature: gene Location: 2126-2704 bp Ori: KUS69914.1 Feature: domain Description: TetR_N Location: 2195-2330 bp Feature: domain Description: TetR_N Location: 2195-2330 bp Feature: domain Description: TetR_C_28 Location: 2405-2693 bp Feature: domain Description: TetR_C_28 Location: 24 05-2693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), TetR_N (pfam00440), TetR_C_28 (pfam17937)