myRT

myRT report for GCA_001519355.1_ASM151935v1

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Seq: LQSQ01000072.1 Escherichia coli strain GN02196 GCID_ECOLID_00022_NODE_5.ctg_1, whole genome shotgun sequence (286702 bp)
Overview 1 RT 1: 57388-64313 bp Neighborhood of RT #1 [57388, 65203] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 57388-58407 bp Ori: KUS87554.1 Feature: domain Description: Q Location: 57391-58402 bp Feature: domain Description: Q Location: 57391 -58402 bp Feature: gene Location: 58450-59157 bp Feature: gene Location: 59154-60380 bp Ori: KUS87556.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59340-59922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59340-59922 bp Feature: gene Location: 60895-62439 bp Ori: KUS87557.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 61312-61765 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 61 31 2-61 765 bp Feature: gene Location: 62605-62823 bp Feature: gene Location: 62927-65203 bp Ori: KUS87558.1 Feature: domain Description: Phage_GPA Location: 63326-64313 bp Feature: domain Description: Phage_GPA Location: 63326-6431 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)

Seq: LQSQ01000074.1 Escherichia coli strain GN02196 GCID_ECOLID_00022_NODE_55.ctg_1, whole genome shotgun sequence (7729 bp)
Overview 1 RT 1: 4059-6790 bp Neighborhood of RT #1 [4059, 6885] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4059-4292 bp Ori: KUS87482.1 Feature: domain Description: DUF905 Location: 4089-4287 bp Feature: domain Description: DUF905 Location: 4089-42 87 bp Feature: gene Location: 4349-4834 bp Ori: KUS87483.1 Feature: domain Description: PRK13732 Location: 4352-4832 bp Feature: domain Description: PRK13732 Location: 4352 -4832 bp Feature: gene Location: 4984-6885 bp Ori: KUS87484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5251-6082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 51-6082 bp Feature: domain Description: Intron_maturas2 Location: 6196-6454 bp Feature: domain Description: Intron_maturas2 Location: 6196-6454 bp Feature: domain Description: HNHc Note: nucleases Location: 6628-6790 bp Feature: domain Description: HNHc Note: nucleases Location: 662 8-6790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LQSQ01000061.1 Escherichia coli strain GN02196 GCID_ECOLID_00022_NODE_41.ctg_1, whole genome shotgun sequence (10154 bp)
Overview 1 RT 1: 2682-5738 bp Neighborhood of RT #1 [2682, 5776] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2682-3053 bp Feature: gene Location: 2968-3393 bp Feature: gene Location: 3362-4870 bp Ori: KUS87999.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3620-4352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 620-43 52 bp Feature: domain Description: GIIM Note: maturase Location: 4427-4625 bp Feature: domain Description: GIIM Note: maturase Location: 4427-4625 bp Feature: gene Location: 5047-5343 bp Ori: KUS87998.1 Feature: domain Description: PHA02517 Location: 5050-5299 bp Feature: domain Description: PHA02517 Location: 5050-5299 bp Feature: gene Location: 5372-5776 bp Ori: KUS87993.1 Feature: domain Description: InsE Location: 5402-5738 bp Feature: domain Description: InsE Location: 5402-573 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)