myRT

myRT report for GCA_001519485.1_ASM151948v1

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Seq: LQVU01000165.1 Escherichia coli strain GN03398 GCID_ECOLID_00140_NODE_68.ctg_1, whole genome shotgun sequence (24968 bp)
Overview 1 RT 1: 22081-24261 bp Neighborhood of RT #1 [22081, 24914] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 22081-22467 bp Feature: gene Location: 22405-23442 bp Ori: KUW83801.1 Feature: domain Description: HTH_29 Location: 22501-22672 bp Feature: domain Description: HTH_29 Location: 22501 -22672 bp Feature: domain Description: HTH_33 Location: 22705-22867 bp Feature: domain Description: HTH_33 Location: 22705-22867 bp Feature: domain Description: DDE_3 Location: 22909-23338 bp Feature: domain Description: DDE_3 Location: 22909-23338 bp Feature: gene Location: 23544-24914 bp Ori: KUW83802.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23805-24261 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23805-24261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: LQVU01000135.1 Escherichia coli strain GN03398 GCID_ECOLID_00140_NODE_40.ctg_1, whole genome shotgun sequence (46122 bp)
Overview 1 RT 1: 3344-9654 bp Neighborhood of RT #1 [3344, 9704] PRK13699 RVT_N RVT-GII GIIM HNHc COG3547 Rep_3 Feature: gene Location: 3344-3565 bp Feature: gene Location: 3566-4219 bp Ori: KUW87327.1 Feature: domain Description: PRK13699 Location: 3611-4217 bp Feature: domain Description: PRK13699 Location: 3611-42 17 bp Feature: gene Location: 4799-6499 bp Ori: KUW87328.1 Feature: domain Description: RVT_N Location: 4853-5096 bp Feature: domain Description: RVT_N Location: 4853-5096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5141-5777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5141-5777 bp Feature: domain Description: GIIM Note: maturase Location: 5828-6062 bp Feature: domain Description: GIIM Note: maturase Location: 582 8-6062 bp Feature: domain Description: HNHc Note: nucleases Location: 6293-6443 bp Feature: domain Description: HNHc Note: nucleases Location: 62 93-6443 bp Feature: gene Location: 7351-8367 bp Ori: KUW87329.1 Feature: domain Description: COG3547 Location: 7366-8332 bp Feature: domain Description: COG3547 Location: 7366-8332 bp Feature: gene Location: 8844-9704 bp Ori: KUW87330.1 Feature: domain Description: Rep_3 Location: 8901-9654 bp Feature: domain Description: Rep_3 Location: 8901-9654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3547 (Transposase ), Rep_3 (pfam01051)