myRT

myRT report for GCA_001519515.1_ASM151951v1

Download annotations/find similar RTs

Seq: LQSN01000187.1 Escherichia coli strain GN02215 GCID_ECOLID_00024_NODE_7.ctg_1, whole genome shotgun sequence (107876 bp)
Overview 1 RT 1: 22596-28627 bp Neighborhood of RT #1 [22596, 28764] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22596-22736 bp Ori: KUS75772.1 Feature: domain Description: SfsB Location: 22605-22677 bp Feature: domain Description: SfsB Location: 22605-22677 bp Feature: gene Location: 22733-23203 bp Feature: gene Location: 23550-26759 bp Ori: KUS75774.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24078-24567 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24078-24567 bp Feature: domain Description: nitrilase Location: 26073-26670 bp Feature: domain Description: nitrilase Location: 26073-26670 bp Feature: gene Location: 27054-27857 bp Ori: KUS75775.1 Feature: domain Description: AbiEi_3_N Location: 27087-27348 bp Feature: domain Description: AbiEi_3_N Location: 27087-27348 bp Feature: domain Description: AbiEi_3 Location: 27360-27816 bp Feature: domain Description: AbiEi_3 Location: 27360-2781 6 bp Feature: gene Location: 27844-28764 bp Ori: KUS75776.1 Feature: domain Description: AbiEii Location: 27886-28627 bp Feature: domain Description: AbiEii Location: 27886-28627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: LQSN01000032.1 Escherichia coli strain GN02215 GCID_ECOLID_00024_NODE_127.ctg_1, whole genome shotgun sequence (5179 bp)
Overview 1 RT 1: 1-5171 bp Neighborhood of RT #1 [1, 5179] RVT-Retrons FRG Q Feature: gene Location: 1-839 bp Feature: gene Location: 1118-1411 bp Feature: gene Location: 1734-2684 bp Ori: KUS88579.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1914-2457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1914-2 457 bp Feature: gene Location: 2793-4157 bp Ori: KUS88578.1 Feature: domain Description: FRG Location: 3360-3645 bp Feature: domain Description: FRG Location: 3360-3645 bp Feature: gene Location: 4670-5179 bp Feature: domain Description: Q Location: 4673-5171 bp Feature: domain Description: Q Location: 4673-5171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901), Q (PHA02536)