myRT

myRT report for GCA_001519525.1_ASM151952v1

Download annotations/find similar RTs

Seq: LQSO01000036.1 Escherichia coli strain GN02235 GCID_ECOLID_00025_NODE_31.ctg_1, whole genome shotgun sequence (51535 bp)
Overview 1 RT 1: 48321-51421 bp Neighborhood of RT #1 [48321, 51426] dut slmA RVT-Retrons pyrE Feature: gene Location: 48321-48779 bp Ori: KUS81443.1 Feature: domain Description: dut Location: 48327-48774 bp Feature: domain Description: dut Location: 48327-48774 bp Feature: gene Location: 48886-49482 bp Ori: KUS81444.1 Gene: slmA Feature: domain Description: slmA Location: 48892-49468 bp Feature: domain Description: slmA Location: 48892-49468 bp Feature: gene Location: 49528-50487 bp Ori: KUS81445.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49663-50212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49663-5021 2 bp Feature: gene Location: 50785-51426 bp Ori: KUS81446.1 Gene: pyrE Feature: domain Description: pyrE Location: 50788-51421 bp Feature: domain Description: pyrE Location: 50788-51 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: LQSO01000017.1 Escherichia coli strain GN02235 GCID_ECOLID_00025_NODE_14.ctg_1, whole genome shotgun sequence (122484 bp)
Overview 1 RT 1: 22951-26105 bp Neighborhood of RT #1 [22951, 26122] PRK10724 SmpB RVT-UG11 PRK09678 Feature: gene Location: 22951-23427 bp Ori: KUS84317.1 Feature: domain Description: PRK10724 Location: 22957-23425 bp Feature: domain Description: PRK1072 4 Location: 2 2 957-2 342 5 bp Feature: gene Location: 23559-24041 bp Ori: KUS84318.1 Gene: smpB Feature: domain Description: SmpB Location: 23589-24036 bp Feature: domain Description: SmpB Location: 2 3589-2 4036 bp Feature: gene Location: 24727-25500 bp Ori: KUS84319.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-25315 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4862 -2 5315 bp Feature: gene Location: 25469-25657 bp Feature: gene Location: 25904-26122 bp Ori: KUS84321.1 Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: domain Description: PRK09678 Location: 2 5907-2 6105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)