myRT

myRT report for GCA_001519575.1_ASM151957v1

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Seq: LQTK01000070.1 Escherichia coli strain GN02380 GCID_ECOLID_00050_NODE_3.ctg_1, whole genome shotgun sequence (184215 bp)
Overview 1 RT 1: 130919-134802 bp Neighborhood of RT #1 [130919, 134807] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130919-131635 bp Ori: KUT87481.1 Gene: rph Feature: domain Description: rph Location: 130922-131630 bp Feature: domain Description: rph Location: 1 30922-1 31 630 bp Feature: gene Location: 131702-132343 bp Ori: KUT87482.1 Gene: pyrE Feature: domain Description: pyrE Location: 131705-132338 bp Feature: domain Description: pyrE Location: 1 31 705-1 32338 bp Feature: gene Location: 132641-133600 bp Ori: KUT87483.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132776-133325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 32776-1 33325 bp Feature: gene Location: 133646-134242 bp Ori: KUT87484.1 Gene: slmA Feature: domain Description: slmA Location: 133652-134228 bp Feature: domain Description: slmA Location: 1 33652-1 34228 bp Feature: gene Location: 134349-134807 bp Ori: KUT87485.1 Feature: domain Description: dut Location: 134355-134802 bp Feature: domain Description: dut Location: 1 34355-1 34802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LQTK01000110.1 Escherichia coli strain GN02380 GCID_ECOLID_00050_NODE_66.ctg_1, whole genome shotgun sequence (19688 bp)
Overview 1 RT 1: 1-3662 bp Neighborhood of RT #1 [1, 3667] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-859 bp Feature: gene Location: 902-1189 bp Feature: gene Location: 1297-2667 bp Ori: KUT84412.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1525-2131 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 152 5-2 131 bp Feature: gene Location: 2645-3196 bp Ori: KUT84413.1 Feature: domain Description: SLATT_5 Location: 2651-3167 bp Feature: domain Description: SLATT_5 Location: 2 651-3167 bp Feature: gene Location: 3419-3667 bp Ori: KUT84414.1 Feature: domain Description: PRK10597 Location: 3422-3662 bp Feature: domain Description: PRK10597 Location: 342 2 -3662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)