myRT

myRT report for GCA_001519615.1_ASM151961v1

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Seq: LQUX01000058.1 Escherichia coli strain GN02649 GCID_ECOLID_00098_NODE_150.ctg_1, whole genome shotgun sequence (10584 bp)
Overview 1 RT 1: 6690-9433 bp Neighborhood of RT #1 [6690, 9528] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 6690-6923 bp Ori: KUV78510.1 Feature: domain Description: DUF905 Location: 6720-6918 bp Feature: domain Description: DUF905 Location: 6720-691 8 bp Feature: gene Location: 6980-7477 bp Ori: KUV78511.1 Feature: domain Description: PRK13732 Location: 6983-7475 bp Feature: domain Description: PRK1 3732 Location: 6983-7475 bp Feature: gene Location: 7627-9528 bp Ori: KUV78512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7894-8725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7894-8725 bp Feature: domain Description: Intron_maturas2 Location: 8839-9097 bp Feature: domain Description: Intron_maturas2 Location: 8839-9097 bp Feature: domain Description: HNHc Note: nucleases Location: 9271-9433 bp Feature: domain Description: HNHc Note: nucleases Location: 9271 -9433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LQUX01000017.1 Escherichia coli strain GN02649 GCID_ECOLID_00098_NODE_113.ctg_1, whole genome shotgun sequence (15367 bp)
Overview 1 RT 1: 466-3559 bp Neighborhood of RT #1 [466, 3559] PHA02517 RVT-GII GIIM Feature: gene Location: 466-723 bp Feature: gene Location: 806-1293 bp Feature: domain Description: PHA02517 Location: 809-980 bp Feature: domain Description: PHA02 517 Location: 809-980 bp Feature: gene Location: 1374-2882 bp Ori: KUV81149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1632-2364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1632 -2 364 bp Feature: domain Description: GIIM Note: maturase Location: 2439-2637 bp Feature: domain Description: GIIM Note: maturase Location: 2 439-2 637 bp Feature: gene Location: 2851-3276 bp Feature: gene Location: 3191-3559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LQUX01000211.1 Escherichia coli strain GN02649 GCID_ECOLID_00098_NODE_52.ctg_1, whole genome shotgun sequence (34717 bp)
Overview 1 RT 1: 25699-31808 bp Neighborhood of RT #1 [25699, 31867] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 25699-26619 bp Ori: KUV72639.1 Feature: domain Description: AbiEii Location: 25741-26482 bp Feature: domain Description: AbiEii Location: 25741-26482 bp Feature: gene Location: 26606-27409 bp Ori: KUV72640.1 Feature: domain Description: AbiEi_3_N Location: 26639-26900 bp Feature: domain Description: AbiEi_3 _N Location: 2663 9-26900 bp Feature: domain Description: AbiEi_3 Location: 26912-27368 bp Feature: domain Description: AbiEi_3 Location: 26912-273 68 bp Feature: gene Location: 27704-30913 bp Ori: KUV72641.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 28232-28721 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2823 2-28721 bp Feature: domain Description: nitrilase Location: 30227-30824 bp Feature: domain Description: nitrilase Location: 3 0227-3 0824 bp Feature: gene Location: 31260-31730 bp Feature: gene Location: 31727-31867 bp Ori: KUV72643.1 Feature: domain Description: SfsB Location: 31736-31808 bp Feature: domain Description: SfsB Location: 3 173 6-3 1808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: LQUX01000188.1 Escherichia coli strain GN02649 GCID_ECOLID_00098_NODE_31.ctg_1, whole genome shotgun sequence (45406 bp)
Overview 1 RT 1: 19971-26431 bp Neighborhood of RT #1 [19971, 26454] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 19971-20888 bp Ori: KUV74005.1 Feature: domain Description: PFLE_PFLC Location: 20007-20862 bp Feature: domain Description: PFLE_PFLC Location: 20007-20862 bp Feature: gene Location: 21025-21930 bp Feature: gene Location: 22416-22955 bp Ori: KUV74007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22746-22824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2274 6-22824 bp Feature: gene Location: 22983-23504 bp Ori: KUV74008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22989-23271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22989-23271 bp Feature: domain Description: GIIM Note: maturase Location: 23319-23499 bp Feature: domain Description: GIIM Note: maturase Location: 23319-234 99 bp Feature: gene Location: 24153-25382 bp Ori: KUV74009.1 Feature: domain Description: YesM Location: 24633-25374 bp Feature: domain Description: YesM Location: 24 633-25374 bp Feature: gene Location: 25399-26454 bp Ori: KUV74010.1 Feature: domain Description: YesN Location: 25402-25801 bp Feature: domain Description: YesN Location: 254 02-25801 bp Feature: domain Description: YesN Location: 26134-26431 bp Feature: domain Description: YesN Location: 26134 -264 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)