myRT

myRT report for GCA_001519635.1_ASM151963v1

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Seq: LQTF01000082.1 Escherichia coli strain GN02354 GCID_ECOLID_00044_NODE_172.ctg_1, whole genome shotgun sequence (3004 bp)
Overview 1 RT 1: 1-2987 bp Neighborhood of RT #1 [1, 3004] DDE_Tnp_1_assoc YhhI RVT-GII GIIM YhhI YhhI Feature: gene Location: 1-419 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 22-283 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 22-283 bp Feature: gene Location: 595-783 bp Feature: domain Description: YhhI Location: 598-769 bp Feature: domain Description: YhhI Location: 598-769 bp Feature: gene Location: 866-2116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070-1727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 070-1 727 bp Feature: domain Description: GIIM Note: maturase Location: 1808-2030 bp Feature: domain Description: GIIM Note: maturase Location: 1 808-2030 bp Feature: gene Location: 2480-2620 bp Feature: gene Location: 2648-3004 bp Feature: domain Description: YhhI Location: 2651-2807 bp Feature: domain Description: YhhI Location: 2651 -2807 bp Feature: domain Description: YhhI Location: 2807-2987 bp Feature: domain Description: YhhI Location: 2807-2987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: LQTF01000262.1 Escherichia coli strain GN02354 GCID_ECOLID_00044_NODE_68.ctg_1, whole genome shotgun sequence (25153 bp)
Overview 1 RT 1: 1-1631 bp Neighborhood of RT #1 [1, 1631] RVT-GII Feature: gene Location: 1-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59-952 bp Feature: gene Location: 920-1345 bp Feature: gene Location: 1260-1631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LQTF01000046.1 Escherichia coli strain GN02354 GCID_ECOLID_00044_NODE_14.ctg_1, whole genome shotgun sequence (77053 bp)
Overview 1 RT 1: 17129-23380 bp Neighborhood of RT #1 [17129, 24282] Q FRG RVT-Retrons Phage_GPA Feature: gene Location: 17129-18163 bp Feature: domain Description: Q Location: 17132-18155 bp Feature: domain Description: Q Location: 1713 2-18155 bp Feature: gene Location: 18676-20040 bp Feature: domain Description: FRG Location: 19243-19528 bp Feature: domain Description: FRG Location: 19243 -19528 bp Feature: gene Location: 20149-21099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20329-20872 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 203 29-20872 bp Feature: gene Location: 21422-21715 bp Feature: gene Location: 21994-24282 bp Feature: domain Description: Phage_GPA Location: 22393-23380 bp Feature: domain Description: Phage_GPA Location: 223 93 -23 3 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, Phage_GPA (pfam05840)

Seq: LQTF01000093.1 Escherichia coli strain GN02354 GCID_ECOLID_00044_NODE_182.ctg_1, whole genome shotgun sequence (2527 bp)
Overview 1 RT 1: 93-1725 bp Neighborhood of RT #1 [93, 1760] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: RT Description: RVT_N Location: 141-378 bp Feature: RT Description: RVT_N Location: 14 1-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 29-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)