myRT

myRT report for GCA_001519945.1_ASM151994v1

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Seq: LQVC01000279.1 Escherichia coli strain GN02690 GCID_ECOLID_00106_NODE_35.ctg_1, whole genome shotgun sequence (38814 bp)
Overview 1 RT 1: 1-2772 bp Neighborhood of RT #1 [1, 2777] RVT-Retrons slmA dut Feature: gene Location: 1-313 bp Feature: gene Location: 611-1570 bp Ori: KUW02760.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 746-1295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 746-1 295 bp Feature: gene Location: 1616-2212 bp Ori: KUW02761.1 Gene: slmA Feature: domain Description: slmA Location: 1622-2198 bp Feature: domain Description: slmA Location: 1 622-21 98 bp Feature: gene Location: 2319-2777 bp Ori: KUW02762.1 Feature: domain Description: dut Location: 2325-2772 bp Feature: domain Description: dut Location: 2325-2772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LQVC01000166.1 Escherichia coli strain GN02690 GCID_ECOLID_00106_NODE_248.ctg_1, whole genome shotgun sequence (2399 bp)
Overview 1 RT 1: 1-2399 bp Neighborhood of RT #1 [1, 2399] PocR LytS RVT-GII GIIM Feature: gene Location: 1-984 bp Ori: KUW05868.1 Feature: domain Description: PocR Location: 28-514 bp Feature: domain Description: PocR Location: 2 8-514 bp Feature: domain Description: LytS Location: 580-967 bp Feature: domain Description: LytS Location: 580-967 bp Feature: gene Location: 1355-1534 bp Feature: gene Location: 1633-2154 bp Ori: KUW05870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639-192 1 bp Feature: domain Description: GIIM Note: maturase Location: 1969-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1969-2 149 bp Feature: gene Location: 2182-2399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PocR (pfam10114), LytS (COG3275), RVT-GII, GIIM (pfam08388)