myRT

myRT report for GCA_001520015.1_ASM152001v1

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Seq: LQTI01000176.1 Escherichia coli strain GN02370 GCID_ECOLID_00048_NODE_76.ctg_1, whole genome shotgun sequence (3666 bp)
Overview 1 RT 1: 1-2140 bp Neighborhood of RT #1 [1, 2178] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1272 bp Ori: KUT71065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1 027 bp Feature: gene Location: 1449-1745 bp Ori: KUT71068.1 Feature: domain Description: PHA02517 Location: 1452-1701 bp Feature: domain Description: PHA0251 7 Location: 1 452-1 701 bp Feature: gene Location: 1774-2178 bp Ori: KUT71066.1 Feature: domain Description: InsE Location: 1804-2140 bp Feature: domain Description: InsE Location: 1 804-21 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: LQTI01000125.1 Escherichia coli strain GN02370 GCID_ECOLID_00048_NODE_3.ctg_1, whole genome shotgun sequence (326994 bp)
Overview 1 RT 1: 212528-221046 bp Neighborhood of RT #1 [212528, 221324] INT_Rci_Hp1_C INT_P4_C RVT-UG3 RVT-UG8 XerC DNA_BRE_C Feature: gene Location: 212528-213994 bp Ori: KUT74679.1 Feature: domain Description: INT_Rci_Hp1_C Location: 212906-213155 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 12 906-2 13155 bp Feature: domain Description: INT_P4_C Location: 213332-213857 bp Feature: domain Description: INT_P4_C Location: 2 13332 -2 13857 bp Feature: gene Location: 213991-214605 bp Feature: gene Location: 214826-216097 bp Ori: KUT74681.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 215108-215603 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 15108-2 15603 bp Feature: gene Location: 216094-218103 bp Ori: KUT74682.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 216667-217111 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 16667-2 17111 bp Feature: gene Location: 218777-220012 bp Ori: KUT74790.1 Feature: domain Description: XerC Location: 218903-219908 bp Feature: domain Description: XerC Location: 2 18903-2 19908 bp Feature: gene Location: 219954-221324 bp Ori: KUT74683.1 Feature: domain Description: DNA_BRE_C Location: 220446-221046 bp Feature: domain Description: DNA_BRE_C Location: 2 2 0446-2 2 1046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3, RVT-UG8, XerC (COG4973), DNA_BRE_C (cl00213)

Seq: LQTI01000146.1 Escherichia coli strain GN02370 GCID_ECOLID_00048_NODE_49.ctg_1, whole genome shotgun sequence (17280 bp)
Overview 1 RT 1: 12503-14454 bp Neighborhood of RT #1 [12503, 14454] PRK10173 PRK10173 RVT-GII Feature: gene Location: 12503-12952 bp Ori: KUT73099.1 Feature: domain Description: PRK10173 Location: 12506-12944 bp Feature: domain Description: PRK10173 Location: 12506-12944 bp Feature: gene Location: 12927-13247 bp Ori: KUT73100.1 Feature: domain Description: PRK10173 Location: 12930-13158 bp Feature: domain Description: PRK10173 Location: 1293 0-13 158 bp Feature: gene Location: 13286-13774 bp Ori: KUT73101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13544-13613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 544-13 613 bp Feature: gene Location: 13743-14168 bp Feature: gene Location: 14083-14454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII