myRT

myRT report for GCA_001520175.1_ASM152017v1

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Seq: LQVH01000141.1 Escherichia coli strain GN02769 GCID_ECOLID_00117_NODE_225.ctg_1, whole genome shotgun sequence (4432 bp)
Overview 1 RT 1: 1-4432 bp Neighborhood of RT #1 [1, 4432] RVT-Retrons FRG Feature: gene Location: 1-381 bp Feature: gene Location: 660-953 bp Feature: gene Location: 1276-2226 bp Ori: KUW33637.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1456-1999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 456-1 999 bp Feature: gene Location: 2335-3699 bp Ori: KUW33636.1 Feature: domain Description: FRG Location: 2902-3187 bp Feature: domain Description: FRG Location: 2902-31 87 bp Feature: gene Location: 4212-4432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901)

Seq: LQVH01000435.1 Escherichia coli strain GN02769 GCID_ECOLID_00117_NODE_9.ctg_1, whole genome shotgun sequence (68042 bp)
Overview 1 RT 1: 42360-48469 bp Neighborhood of RT #1 [42360, 48528] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 42360-43280 bp Ori: KUW20181.1 Feature: domain Description: AbiEii Location: 42402-43143 bp Feature: domain Description: AbiEii Location: 42 402 -43143 bp Feature: gene Location: 43267-44070 bp Ori: KUW20182.1 Feature: domain Description: AbiEi_3_N Location: 43300-43561 bp Feature: domain Description: AbiEi_3_N Location: 43300-43561 bp Feature: domain Description: AbiEi_3 Location: 43573-44029 bp Feature: domain Description: AbiEi_3 Location: 43573-4402 9 bp Feature: gene Location: 44365-47574 bp Ori: KUW20183.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44893-45382 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44893-45382 bp Feature: domain Description: nitrilase Location: 46888-47485 bp Feature: domain Description: nitrilase Location: 46888-47485 bp Feature: gene Location: 47921-48391 bp Feature: gene Location: 48388-48528 bp Ori: KUW20185.1 Feature: domain Description: SfsB Location: 48397-48469 bp Feature: domain Description: SfsB Location: 48397-48469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)