myRT

myRT report for GCA_001520455.1_ASM152045v1

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Seq: LQTT01000015.1 Escherichia coli strain GN02427 GCID_ECOLID_00061_NODE_22.ctg_1, whole genome shotgun sequence (58489 bp)
Overview 1 RT 1: 53711-55662 bp Neighborhood of RT #1 [53711, 55662] PRK10173 PRK10173 RVT-GII Feature: gene Location: 53711-54160 bp Ori: KUU26465.1 Feature: domain Description: PRK10173 Location: 53714-54152 bp Feature: domain Description: PRK1 01 73 Location: 5371 4-541 52 bp Feature: gene Location: 54135-54455 bp Ori: KUU26466.1 Feature: domain Description: PRK10173 Location: 54138-54366 bp Feature: domain Description: PRK1 01 73 Location: 541 38-54366 bp Feature: gene Location: 54494-54982 bp Ori: KUU26474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54752-54821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54752-54821 bp Feature: gene Location: 54951-55376 bp Feature: gene Location: 55291-55662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: LQTT01000067.1 Escherichia coli strain GN02427 GCID_ECOLID_00061_NODE_7.ctg_1, whole genome shotgun sequence (214119 bp)
Overview 1 RT 1: 104099-112758 bp Neighborhood of RT #1 [104099, 112895] DNA_BRE_C XerC RVT-UG8 RVT-UG3 INT_Rci_Hp1_C INT_P4_C Feature: gene Location: 104099-105469 bp Ori: KUU20632.1 Feature: domain Description: DNA_BRE_C Location: 104591-105191 bp Feature: domain Description: DNA_BRE_C Location: 104591-105191 bp Feature: gene Location: 105411-106646 bp Ori: KUU20735.1 Feature: domain Description: XerC Location: 105537-106542 bp Feature: domain Description: XerC Location: 105537-106542 bp Feature: gene Location: 107320-109329 bp Ori: KUU20633.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 107893-108337 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 107893-108337 bp Feature: gene Location: 109326-110597 bp Ori: KUU20634.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 109608-110103 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 109608-110103 bp Feature: gene Location: 110818-111432 bp Feature: gene Location: 111429-112895 bp Ori: KUU20636.1 Feature: domain Description: INT_Rci_Hp1_C Location: 111807-112056 bp Feature: domain Description: INT_Rci_Hp1_C Location: 111807-112 056 bp Feature: domain Description: INT_P4_C Location: 112233-112758 bp Feature: domain Description: INT_P4_C Location: 112 2 33-112 758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_BRE_C (cl00213), XerC (COG4973), RVT-UG8, RVT-UG3, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801)

Seq: LQTT01000061.1 Escherichia coli strain GN02427 GCID_ECOLID_00061_NODE_64.ctg_1, whole genome shotgun sequence (2746 bp)
Overview 1 RT 1: 1-2140 bp Neighborhood of RT #1 [1, 2178] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1272 bp Ori: KUU21014.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: gene Location: 1449-1745 bp Ori: KUU21018.1 Feature: domain Description: PHA02517 Location: 1452-1701 bp Feature: domain Description: PHA02517 Location: 1452-1701 bp Feature: gene Location: 1774-2178 bp Ori: KUU21015.1 Feature: domain Description: InsE Location: 1804-2140 bp Feature: domain Description: InsE Location: 1804-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)