myRT

myRT report for GCA_001520715.1_ASM152071v1

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Seq: LQVY01000065.1 Escherichia coli strain GN03545 GCID_ECOLID_00146_NODE_157.ctg_1, whole genome shotgun sequence (7776 bp)
Overview 1 RT 1: 4898-7078 bp Neighborhood of RT #1 [4898, 7731] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 4898-5284 bp Feature: gene Location: 5222-6259 bp Ori: KUX11884.1 Feature: domain Description: HTH_29 Location: 5318-5489 bp Feature: domain Description: HTH_29 Location: 531 8-5489 bp Feature: domain Description: HTH_33 Location: 5522-5684 bp Feature: domain Description: HTH_33 Location: 5522-5684 bp Feature: domain Description: DDE_3 Location: 5726-6155 bp Feature: domain Description: DDE_3 Location: 5726-61 55 bp Feature: gene Location: 6361-7731 bp Ori: KUX11885.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6622-7078 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6622-7078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: LQVY01000081.1 Escherichia coli strain GN03545 GCID_ECOLID_00146_NODE_171.ctg_1, whole genome shotgun sequence (3615 bp)
Overview 1 RT 1: 1438-3370 bp Neighborhood of RT #1 [1438, 3615] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1438-1842 bp Ori: KUX10925.1 Feature: domain Description: InsE Location: 1468-1804 bp Feature: domain Description: InsE Location: 1468-1804 bp Feature: gene Location: 1871-2260 bp Feature: domain Description: PHA02517 Location: 1874-2216 bp Feature: domain Description: PHA02 517 Location: 1874-2 2 16 bp Feature: gene Location: 2344-3615 bp Ori: KUX10926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2365-3097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 365-3097 bp Feature: domain Description: GIIM Note: maturase Location: 3172-3370 bp Feature: domain Description: GIIM Note: maturase Location: 3172 -3370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LQVY01000102.1 Escherichia coli strain GN03545 GCID_ECOLID_00146_NODE_190.ctg_1, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 1-994 bp Neighborhood of RT #1 [1, 994] RVT-GII Feature: gene Location: 1-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 283-708 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII