myRT

myRT report for GCA_001520775.2_ASM152077v2

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Seq: LQVV02000005.1 Escherichia coli strain GN03409 000000F_arrow, whole genome shotgun sequence (5127203 bp)
Overview 1 RT 1: 4082237-4086167 bp 2 RT 2: 4542647-4547989 bp Neighborhood of RT #1 [4082237, 4086579] TetR_N TetR_C_28 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [4542647, 4548003] FrsA HTH_1 PBP2_CrgA_like_5 RVT-GII GIIM HTH_1 PBP2_CrgA_like_5 Feature: gene Location: 4082237-4082815 bp Feature: domain Description: TetR_N Location: 4082306-4082441 bp Feature: domain Description: TetR_N Location: 4082306-4082441 bp Feature: domain Description: TetR_C_28 Location: 4082516-4082804 bp Feature: domain Description: TetR_C_28 Location: 408251 6-4082804 bp Feature: gene Location: 4083106-4083579 bp Feature: domain Description: PHA02517 Location: 4083112-4083577 bp Feature: domain Description: PHA0251 7 Location: 40831 1 2-4083577 bp Feature: gene Location: 4083659-4085167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4083917-4084649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408391 7-4084649 bp Feature: domain Description: GIIM Note: maturase Location: 4084724-4084922 bp Feature: domain Description: GIIM Note: maturase Location: 4084724-4084922 bp Feature: gene Location: 4085476-4085847 bp Feature: gene Location: 4085840-4086579 bp Feature: domain Description: InsE Location: 4085843-4086167 bp Feature: domain Description: InsE Location: 4085843-40861 67 bp Feature: gene Location: 4542647-4543567 bp Feature: domain Description: FrsA Location: 4542656-4543565 bp Feature: domain Description: FrsA Location: 4542656-4543565 bp Feature: gene Location: 4543724-4544560 bp Feature: domain Description: HTH_1 Location: 4543760-4543928 bp Feature: domain Description: HTH_1 Location: 4543760-4543928 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4544009-4544561 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4544009-4544561 bp Feature: gene Location: 4544642-4546150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4544900-4545632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4544900-4545632 bp Feature: domain Description: GIIM Note: maturase Location: 4545707-4545905 bp Feature: domain Description: GIIM Note: maturase Location: 4545707-4545905 bp Feature: gene Location: 4546459-4546842 bp Feature: gene Location: 4547110-4548003 bp Feature: domain Description: HTH_1 Location: 4547128-4547305 bp Feature: domain Description: HTH_1 Location: 45471 28-4547305 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4547386-4547989 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4547386-4547989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_28 (pfam17937), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), FrsA (COG1073), HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474)

Seq: LQVV02000008.1 Escherichia coli strain GN03409 8_arrow, whole genome shotgun sequence (76032 bp)
Overview 1 RT 1: 50871-54501 bp Neighborhood of RT #1 [50871, 54500] PRK09413 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 50871-51355 bp Feature: domain Description: PRK09413 Location: 50919-51279 bp Feature: domain Description: PRK09413 Location: 50919-512 79 bp Feature: gene Location: 51400-51873 bp Feature: domain Description: PHA02517 Location: 51406-51871 bp Feature: domain Description: PHA02 517 Location: 51406-51871 bp Feature: gene Location: 51963-53471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52221-52953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 2 1-52 953 bp Feature: domain Description: GIIM Note: maturase Location: 53028-53226 bp Feature: domain Description: GIIM Note: maturase Location: 5302 8-532 2 6 bp Feature: gene Location: 53780-54151 bp Feature: gene Location: 54144-54500 bp Feature: domain Description: PHA02517 Location: 54153-54501 bp Feature: domain Description: PHA02 517 Location: 54153-54501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)