myRT

myRT report for GCA_001521025.1_ASM152102v1

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Seq: LQUS01000056.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_149.ctg_1, whole genome shotgun sequence (12067 bp)
Overview 1 RT 1: 9539-11672 bp Neighborhood of RT #1 [9539, 11917] PHA02517 RVT-GII GIIM Feature: gene Location: 9539-9802 bp Ori: KUV60621.1 Feature: domain Description: PHA02517 Location: 9542-9737 bp Feature: domain Description: PHA0251 7 Location: 9542-9737 bp Feature: gene Location: 10015-10440 bp Feature: gene Location: 10409-11917 bp Ori: KUV60623.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10667-11399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0667-1 1 399 bp Feature: domain Description: GIIM Note: maturase Location: 11474-11672 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 474-1 1 672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LQUS01000167.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_249.ctg_1, whole genome shotgun sequence (2368 bp)
Overview 1 RT 1: 151-1994 bp Neighborhood of RT #1 [151, 2218] RVT-GII GIIM GIIM Feature: gene Location: 151-1659 bp Ori: KUV53924.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: domain Description: GIIM Note: maturase Location: 12 16-1414 bp Feature: gene Location: 1739-2218 bp Ori: KUV53923.1 Feature: domain Description: GIIM Note: maturase Location: 1775-1994 bp Feature: domain Description: GIIM Note: maturase Location: 1775-1994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LQUS01000132.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_217.ctg_1, whole genome shotgun sequence (4071 bp)
Overview 1 RT 1: 151-3692 bp Neighborhood of RT #1 [151, 3692] RVT-GII GIIM InsE Feature: gene Location: 151-1659 bp Ori: KUV55861.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: gene Location: 2718-3029 bp Ori: KUV55858.1 Feature: domain Description: InsE Location: 2721-3012 bp Feature: domain Description: InsE Location: 2721-3 012 bp Feature: gene Location: 3123-3692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: LQUS01000166.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_248.ctg_1, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 1-2028 bp Neighborhood of RT #1 [1, 2273] RVT-GII GIIM Feature: gene Location: 1-158 bp Feature: gene Location: 765-2273 bp Ori: KUV53967.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1755 bp Feature: domain Description: GIIM Note: maturase Location: 1830-2028 bp Feature: domain Description: GIIM Note: maturase Location: 1830-2028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LQUS01000123.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_209.ctg_1, whole genome shotgun sequence (4552 bp)
Overview 1 RT 1: 659-4157 bp Neighborhood of RT #1 [659, 4402] PRK11479 InsE RVT-GII GIIM Feature: gene Location: 659-1477 bp Ori: KUV56504.1 Feature: domain Description: PRK11479 Location: 677-1475 bp Feature: domain Description: PRK11479 Location: 677-1475 bp Feature: gene Location: 1524-1835 bp Ori: KUV56505.1 Feature: domain Description: InsE Location: 1527-1818 bp Feature: domain Description: InsE Location: 15 27-1818 bp Feature: gene Location: 2894-4402 bp Ori: KUV56506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3152-3884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315 2-3884 bp Feature: domain Description: GIIM Note: maturase Location: 3959-4157 bp Feature: domain Description: GIIM Note: maturase Location: 395 9-415 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11479 (YaeF family permuted papain-like enzyme), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: LQUS01000144.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_228.ctg_1, whole genome shotgun sequence (3036 bp)
Overview 1 RT 1: 1-2641 bp Neighborhood of RT #1 [1, 2886] PHA02517 RVT-GII GIIM Feature: gene Location: 1-378 bp Feature: domain Description: PHA02517 Location: 16-376 bp Feature: domain Description: PHA02517 Location: 16 -376 bp Feature: gene Location: 347-514 bp Feature: gene Location: 1378-2886 bp Ori: KUV55143.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636-2368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 36 -236 8 bp Feature: domain Description: GIIM Note: maturase Location: 2443-2641 bp Feature: domain Description: GIIM Note: maturase Location: 2443-26 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LQUS01000163.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_245.ctg_1, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 151-2443 bp Neighborhood of RT #1 [151, 2508] RVT-GII GIIM PHA02517 Feature: gene Location: 151-1659 bp Ori: KUV54096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: gene Location: 1968-2339 bp Feature: gene Location: 2266-2508 bp Ori: KUV54097.1 Feature: domain Description: PHA02517 Location: 2269-2443 bp Feature: domain Description: PHA02517 Location: 2269-2443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LQUS01000266.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_34.ctg_1, whole genome shotgun sequence (38837 bp)
Overview 1 RT 1: 21397-25279 bp Neighborhood of RT #1 [21397, 25284] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 21397-21855 bp Ori: KUV50567.1 Feature: domain Description: dut Location: 21403-21850 bp Feature: domain Description: dut Location: 21403-218 50 bp Feature: gene Location: 21962-22558 bp Ori: KUV50568.1 Gene: slmA Feature: domain Description: slmA Location: 21968-22544 bp Feature: domain Description: slmA Location: 21968 -22544 bp Feature: gene Location: 22604-23563 bp Ori: KUV50569.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22739-23288 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22739-2328 8 bp Feature: gene Location: 23861-24502 bp Ori: KUV50570.1 Gene: pyrE Feature: domain Description: pyrE Location: 23864-24497 bp Feature: domain Description: pyrE Location: 238 64-24497 bp Feature: gene Location: 24568-25284 bp Ori: KUV50571.1 Gene: rph Feature: domain Description: rph Location: 24571-25279 bp Feature: domain Description: rph Location: 24571-25279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: LQUS01000198.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_277.ctg_1, whole genome shotgun sequence (1347 bp)
Overview 1 RT 1: 1-973 bp Neighborhood of RT #1 [1, 1197] RVT-GII RVT-GII GIIM Feature: gene Location: 1-633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-634 bp Feature: gene Location: 559-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-679 bp Feature: domain Description: GIIM Note: maturase Location: 754-973 bp Feature: domain Description: GIIM Note: maturase Location: 754-9 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LQUS01000121.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_207.ctg_1, whole genome shotgun sequence (4602 bp)
Overview 1 RT 1: 151-3436 bp Neighborhood of RT #1 [151, 3436] RVT-GII GIIM InsE Feature: gene Location: 151-1659 bp Ori: KUV56687.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: gene Location: 2718-3029 bp Ori: KUV56683.1 Feature: domain Description: InsE Location: 2721-3012 bp Feature: domain Description: InsE Location: 2721-3012 bp Feature: gene Location: 3221-3436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: LQUS01000134.1 Escherichia coli strain GN02614 GCID_ECOLID_00092_NODE_219.ctg_1, whole genome shotgun sequence (3977 bp)
Overview 1 RT 1: 151-3896 bp Neighborhood of RT #1 [151, 3901] RVT-GII GIIM InsE Php Feature: gene Location: 151-1659 bp Ori: KUV55733.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-11 41 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1414 bp Feature: gene Location: 2718-3029 bp Ori: KUV55732.1 Feature: domain Description: InsE Location: 2721-3012 bp Feature: domain Description: InsE Location: 2721-3012 bp Feature: gene Location: 3119-3901 bp Feature: domain Description: Php Location: 3125-3896 bp Feature: domain Description: Php Location: 3125-3896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), Php (COG1735)