myRT

myRT report for GCA_001521285.1_ASM152128v1

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Seq: LQUA01000079.1 Escherichia coli strain GN02461 GCID_ECOLID_00069_NODE_6.ctg_1, whole genome shotgun sequence (193481 bp)
Overview 1 RT 1: 158182-165022 bp Neighborhood of RT #1 [158182, 165921] Q RVT-Retrons Phage_GPA Feature: gene Location: 158182-159201 bp Ori: KUU64876.1 Feature: domain Description: Q Location: 158185-159196 bp Feature: domain Description: Q Location: 1 581 85-1 591 96 bp Feature: gene Location: 159244-159951 bp Feature: gene Location: 159948-161174 bp Ori: KUU64878.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160134-160716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 601 34-1 6071 6 bp Feature: gene Location: 161644-163482 bp Feature: gene Location: 163636-165921 bp Ori: KUU64880.1 Feature: domain Description: Phage_GPA Location: 164035-165022 bp Feature: domain Description: Phage_GPA Location: 1 64035-1 65022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, Phage_GPA (pfam05840)

Seq: LQUA01000066.1 Escherichia coli strain GN02461 GCID_ECOLID_00069_NODE_48.ctg_1, whole genome shotgun sequence (18094 bp)
Overview 1 RT 1: 11325-17167 bp Neighborhood of RT #1 [11325, 17202] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 11325-11603 bp Ori: KUU66045.1 Feature: domain Description: DUF5339 Location: 11388-11589 bp Feature: domain Description: DUF5339 Location: 11388-11589 bp Feature: gene Location: 11941-12963 bp Ori: KUU66051.1 Feature: domain Description: Asparaginase_2 Location: 12022-12955 bp Feature: domain Description: Asparaginase_2 Location: 12 02 2 -12 955 bp Feature: gene Location: 13496-13942 bp Ori: KUU66046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13802-13904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13802 -13904 bp Feature: gene Location: 14588-15949 bp Ori: KUU66047.1 Feature: domain Description: DcuC Location: 14591-15923 bp Feature: domain Description: DcuC Location: 14591-1592 3 bp Feature: gene Location: 15946-17202 bp Ori: KUU66048.1 Feature: domain Description: PRK13381 Location: 15952-17167 bp Feature: domain Description: PRK13381 Location: 15952 -17167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: LQUA01000002.1 Escherichia coli strain GN02461 GCID_ECOLID_00069_NODE_10.ctg_1, whole genome shotgun sequence (168057 bp)
Overview 1 RT 1: 137601-145404 bp Neighborhood of RT #1 [137601, 145439] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase proA Feature: gene Location: 137601-138521 bp Ori: KUU74425.1 Feature: domain Description: AbiEii Location: 137643-138384 bp Feature: domain Description: AbiEii Location: 13 7643 -13 83 84 bp Feature: gene Location: 138508-139311 bp Ori: KUU74426.1 Feature: domain Description: AbiEi_3_N Location: 138541-138802 bp Feature: domain Description: AbiEi_3 _N Location: 13 8541-13 8802 bp Feature: domain Description: AbiEi_3 Location: 138814-139270 bp Feature: domain Description: AbiEi_3 Location: 13 8814-13 9270 bp Feature: gene Location: 139606-142815 bp Ori: KUU74427.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140134-140623 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14013 4-140623 bp Feature: domain Description: nitrilase Location: 142129-142726 bp Feature: domain Description: nitrilase Location: 142129-142726 bp Feature: gene Location: 143162-143632 bp Feature: gene Location: 144186-145439 bp Ori: KUU74429.1 Feature: domain Description: proA Location: 144213-145404 bp Feature: domain Description: proA Location: 144213 -145404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), proA (TIGR00407)