myRT

myRT report for GCA_001521835.1_ASM152183v1

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Seq: LRBH01000056.1 Vibrio cholerae strain M888 contig00056, whole genome shotgun sequence (2647 bp)
Overview 1 RT 1: 833-1934 bp Neighborhood of RT #1 [833, 1945] RVT-UNC Feature: gene Location: 833-1294 bp Feature: gene Location: 1390-1572 bp Feature: gene Location: 1664-1945 bp Ori: KUY43865.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 1676-1934 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 676-1 934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-DGRs/RVT-CRISPR/RVT-UG3(RVT-UNC)

Seq: LRBH01000003.1 Vibrio cholerae strain M888 contig00003, whole genome shotgun sequence (341784 bp)
Overview 1 RT 1: 123367-128602 bp Neighborhood of RT #1 [123367, 128628] TIGR02646 COG3950 RVT-Retrons PRK10621 LysR Feature: gene Location: 123367-123984 bp Ori: KUY46353.1 Feature: domain Description: TIGR02646 Location: 123478-123862 bp Feature: domain Description: TIGR02 646 Location: 12 3478-12 3862 bp Feature: gene Location: 123997-125619 bp Ori: KUY46354.1 Feature: domain Description: COG3950 Location: 124183-125614 bp Feature: domain Description: COG3950 Location: 12 4183-12 5614 bp Feature: gene Location: 125620-126567 bp Ori: KUY46513.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125734-126331 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 5734-12 6331 bp Feature: gene Location: 127053-127838 bp Ori: KUY46355.1 Feature: domain Description: PRK10621 Location: 127062-127833 bp Feature: domain Description: PRK1062 1 Location: 12 7062 -12 7833 bp Feature: gene Location: 127768-128628 bp Ori: KUY46356.1 Feature: domain Description: LysR Location: 127774-128602 bp Feature: domain Description: LysR Location: 12 7774-12 8602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK10621 (hypothetical protein; Provisional), LysR (COG0583)