myRT

myRT report for GCA_001523825.1_ASM152382v1

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Seq: LOVQ01000283.1 Burkholderia ubonensis strain MSMB1190 MSMB1190_95, whole genome shotgun sequence (14602 bp)
Overview 1 RT 1: 95-4498 bp Neighborhood of RT #1 [95, 4498] DEDD_Tnp_IS110 COG3547 IS5 RVT-GII INT_RitC_C_like Feature: gene Location: 95-1450 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 167-590 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 67-590 bp Feature: domain Description: COG3547 Location: 992-1328 bp Feature: domain Description: COG3547 Location: 992-1 328 bp Feature: gene Location: 1792-2313 bp Feature: domain Description: IS5 Location: 1984-2314 bp Feature: domain Description: IS5 Location: 1 984-231 4 bp Feature: gene Location: 2829-3677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042-3642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042-3642 bp Feature: gene Location: 3812-4186 bp Feature: domain Description: INT_RitC_C_like Location: 3824-4112 bp Feature: domain Description: INT_RitC_C_like Location: 3824-41 1 2 bp Feature: gene Location: 4274-4498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, INT_RitC_C_like (cd01182), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase )

Seq: LOVQ01000286.1 Burkholderia ubonensis strain MSMB1190 MSMB1190_98, whole genome shotgun sequence (4517 bp)
Overview 1 RT 1: 133-2787 bp Neighborhood of RT #1 [133, 2822] RVT-GII LZ_Tnp_IS66 TnpB_IS66 Feature: gene Location: 133-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-1537 bp Feature: gene Location: 1901-2368 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2021-2249 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 02 1-2 2 49 bp Feature: gene Location: 2469-2822 bp Feature: domain Description: TnpB_IS66 Location: 2499-2787 bp Feature: domain Description: TnpB_IS66 Location: 2 499-2 787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LZ_Tnp_IS66 (pfam13007), TnpB_IS66 (pfam05717)

Seq: LOVQ01000020.1 Burkholderia ubonensis strain MSMB1190 MSMB1190_117, whole genome shotgun sequence (2573 bp)
Overview 1 RT 1: 125-2481 bp Neighborhood of RT #1 [125, 2481] RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 125-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1400 bp Feature: gene Location: 1945-2211 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1963-2047 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1963 -2047 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2065-2176 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2065-2176 bp Feature: gene Location: 2221-2481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: LOVQ01000077.1 Burkholderia ubonensis strain MSMB1190 MSMB1190_169, whole genome shotgun sequence (169762 bp)
Overview 1 RT 1: 1194-8064 bp Neighborhood of RT #1 [1194, 8075] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 1194-1973 bp Feature: domain Description: PRK07533 Location: 1212-1968 bp Feature: domain Description: PRK07533 Location: 1212-1968 bp Feature: gene Location: 2264-4522 bp Feature: domain Description: DUF3141 Location: 2390-4112 bp Feature: domain Description: DUF314 1 Location: 2390-4 112 bp Feature: gene Location: 4771-6120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5236-5872 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5236-5872 bp Feature: gene Location: 6423-6809 bp Feature: domain Description: VOC Location: 6438-6759 bp Feature: domain Description: VOC Location: 64 38-6759 bp Feature: gene Location: 7248-8075 bp Feature: domain Description: Cupin_6 Location: 7257-7716 bp Feature: domain Description: Cupin_6 Location: 7257-7716 bp Feature: domain Description: AraC Location: 7725-8064 bp Feature: domain Description: AraC Location: 7725-8064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07533 (enoyl- reductase FabI), DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: LOVQ01000274.1 Burkholderia ubonensis strain MSMB1190 MSMB1190_87, whole genome shotgun sequence (3521 bp)
Overview 1 RT 1: 378-3261 bp Neighborhood of RT #1 [378, 3404] BON BON BON mcbC-like_oxidoreductase RVT-GII GIIM Feature: gene Location: 378-1028 bp Feature: domain Description: BON Location: 387-585 bp Feature: domain Description: BON Location: 387-5 85 bp Feature: domain Description: BON Location: 612-813 bp Feature: domain Description: BON Location: 612-813 bp Feature: domain Description: BON Location: 831-1023 bp Feature: domain Description: BON Location: 831-1023 bp Feature: gene Location: 1260-1925 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 1395-1893 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 1395 -1893 bp Feature: gene Location: 2040-3404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2373-2988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2373-2988 bp Feature: domain Description: GIIM Note: maturase Location: 3045-3261 bp Feature: domain Description: GIIM Note: maturase Location: 3045 -3261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mcbC-like_oxidoreductase, RVT-GII, GIIM (pfam08388), BON (smart00749)