myRT

myRT report for GCA_001523945.1_ASM152394v1

Download annotations/find similar RTs

Seq: LOWN01000060.1 Burkholderia vietnamiensis strain FL-2-5-10-S1-D0 FL-2-5-10-S1-D0_64, whole genome shotgun sequence (551 bp)
Overview 1 RT 1: 1-550 bp Neighborhood of RT #1 [1, 551] RVT_N RVT-GII Feature: gene Location: 1-551 bp Feature: domain Description: RVT_N Location: 4-235 bp Feature: domain Description: RVT_N Location: 4-235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LOWN01000038.1 Burkholderia vietnamiensis strain FL-2-5-10-S1-D0 FL-2-5-10-S1-D0_44, whole genome shotgun sequence (45364 bp)
Overview 1 RT 1: 42543-45314 bp Neighborhood of RT #1 [42543, 45364] PssA PRK05305 RVT-GII GIIM HNHc Feature: gene Location: 42543-43415 bp Ori: KVF04971.1 Feature: domain Description: PssA Location: 42681-43359 bp Feature: domain Description: PssA Location: 42 681-43359 bp Feature: gene Location: 43431-44075 bp Ori: KVF04972.1 Feature: domain Description: PRK05305 Location: 43455-44067 bp Feature: domain Description: PRK05305 Location: 43455-44067 bp Feature: gene Location: 44192-45364 bp Ori: KVF04976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44198-44645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44198-44645 bp Feature: domain Description: GIIM Note: maturase Location: 44696-44930 bp Feature: domain Description: GIIM Note: maturase Location: 44696-44930 bp Feature: domain Description: HNHc Note: nucleases Location: 45161-45314 bp Feature: domain Description: HNHc Note: nucleases Location: 45161-45314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LOWN01000064.1 Burkholderia vietnamiensis strain FL-2-5-10-S1-D0 FL-2-5-10-S1-D0_68, whole genome shotgun sequence (142811 bp)
Overview 1 RT 1: 136897-142776 bp Neighborhood of RT #1 [136897, 142811] yhbS PRK05297 RVT-GII GIIM HNH Feature: gene Location: 136897-137436 bp Ori: KVF01917.1 Feature: domain Description: yhbS Location: 136933-137428 bp Feature: domain Description: yhbS Location: 13 693 3 -13 7428 bp Feature: gene Location: 137436-141500 bp Ori: KVF01918.1 Feature: domain Description: PRK05297 Location: 137451-141498 bp Feature: domain Description: PRK05297 Location: 13 7451-141498 bp Feature: gene Location: 141651-142811 bp Ori: KVF01928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141657-142104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141657-142104 bp Feature: domain Description: GIIM Note: maturase Location: 142155-142389 bp Feature: domain Description: GIIM Note: maturase Location: 142155-1423 89 bp Feature: domain Description: HNH Note: nucleases Location: 142641-142776 bp Feature: domain Description: HNH Note: nucleases Location: 142641-142776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT yhbS (COG3153), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LOWN01000047.1 Burkholderia vietnamiensis strain FL-2-5-10-S1-D0 FL-2-5-10-S1-D0_52, whole genome shotgun sequence (95125 bp)
Overview 1 RT 1: 24199-30396 bp Neighborhood of RT #1 [24199, 30413] AAA_13 RVT-UG7 PinE Feature: gene Location: 24199-25146 bp Ori: KVF03989.1 Feature: domain Description: AAA_13 Location: 24391-24649 bp Feature: domain Description: AAA_13 Location: 24 391-24 64 9 bp Feature: gene Location: 25261-26073 bp Feature: gene Location: 27805-29445 bp Ori: KVF03991.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 28222-28642 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 28222-2864 2 bp Feature: gene Location: 29799-30413 bp Ori: KVF03992.1 Feature: domain Description: PinE Location: 29802-30396 bp Feature: domain Description: PinE Location: 29802-30396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_13 (pfam13166), RVT-UG7, PinE (COG1961)