myRT

myRT report for GCA_001525205.1_ASM152520v1

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Seq: LRJT01000056.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1348 GCID_ENTES_00087_NODE_6.ctg_1, whole genome shotgun sequence (301160 bp)
Overview 1 RT 1: 42582-49952 bp Neighborhood of RT #1 [42582, 49954] DUF932 RVT-Retrons GlpR ribokinase LplB Feature: gene Location: 42582-43289 bp Feature: gene Location: 43964-44785 bp Feature: domain Description: DUF932 Location: 44075-44750 bp Feature: domain Description: DUF932 Location: 44075-44750 bp Feature: gene Location: 45036-46760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45174-45798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 451 74-45798 bp Feature: gene Location: 47671-48909 bp Feature: domain Description: GlpR Location: 47674-47866 bp Feature: domain Description: GlpR Location: 47674-47866 bp Feature: domain Description: ribokinase Location: 47971-48835 bp Feature: domain Description: ribokinase Location: 47971 -48835 bp Feature: gene Location: 49058-49954 bp Feature: domain Description: LplB Location: 49073-49952 bp Feature: domain Description: LplB Location: 49073-49952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-Retrons, GlpR (COG1349), ribokinase (PTZ00292), LplB (COG4209)

Seq: LRJT01000042.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1348 GCID_ENTES_00087_NODE_47.ctg_1, whole genome shotgun sequence (3500 bp)
Overview 1 RT 1: 36-3430 bp Neighborhood of RT #1 [36, 3441] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 36-248 bp Feature: domain Description: PHA02517 Location: 39-240 bp Feature: domain Description: PHA02 517 Location: 39-2 40 bp Feature: gene Location: 575-2083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833-1565 bp Feature: domain Description: GIIM Note: maturase Location: 1640-1838 bp Feature: domain Description: GIIM Note: maturase Location: 1640-1838 bp Feature: gene Location: 2690-3115 bp Feature: domain Description: PHA02517 Location: 2711-3050 bp Feature: domain Description: PHA02 517 Location: 2 711-3050 bp Feature: gene Location: 3157-3441 bp Feature: domain Description: InsE Location: 3169-3430 bp Feature: domain Description: InsE Location: 3169-3430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: LRJT01000029.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1348 GCID_ENTES_00087_NODE_35.ctg_1, whole genome shotgun sequence (17832 bp)
Overview 1 RT 1: 5238-9674 bp Neighborhood of RT #1 [5238, 9682] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 5238-5741 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5349-5739 bp Feature: domain Description: DDE_Tnp_IS1 Location: 53 49-573 9 bp Feature: gene Location: 5660-5935 bp Feature: domain Description: InsA Location: 5666-5927 bp Feature: domain Description: InsA Location: 5666-5927 bp Feature: gene Location: 6087-7571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6489-7179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6489-7179 bp Feature: gene Location: 7980-8411 bp Feature: domain Description: PRK10276 Location: 8031-8394 bp Feature: domain Description: PRK10276 Location: 803 1-83 94 bp Feature: gene Location: 8411-9682 bp Feature: domain Description: umuC Location: 8414-9674 bp Feature: domain Description: umuC Location: 8414-9674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)