myRT

myRT report for GCA_001526115.1_ASM152611v1

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Seq: LRJS01000080.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1351 GCID_ENTES_00088_NODE_71.ctg_1, whole genome shotgun sequence (2277 bp)
Overview 1 RT 1: 94-1357 bp Neighborhood of RT #1 [94, 1602] RVT-GII GIIM Feature: gene Location: 94-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-1 084 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 59-1 357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LRJS01000027.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1351 GCID_ENTES_00088_NODE_23.ctg_1, whole genome shotgun sequence (84880 bp)
Overview 1 RT 1: 42967-53668 bp Neighborhood of RT #1 [42967, 53757] DsbA_DsbC_DsbG Big_3_3 Big_3_3 PKD RVT-GII GIIM PRK09409 PRK09413 RVT-GII TrbC TraV Feature: gene Location: 42967-43674 bp Feature: domain Description: DsbA_DsbC_DsbG Location: 43069-43660 bp Feature: domain Description: DsbA_DsbC_DsbG Location: 43069-43660 bp Feature: gene Location: 43823-49354 bp Feature: domain Description: Big_3_3 Location: 44150-44549 bp Feature: domain Description: Big_3_3 Location: 44150-44549 bp Feature: domain Description: Big_3_3 Location: 45491-45959 bp Feature: domain Description: Big_3_3 Location: 45491-45959 bp Feature: domain Description: PKD Location: 48641-48812 bp Feature: domain Description: PKD Location: 48641-48812 bp Feature: gene Location: 49531-50412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49534-49933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49534-49933 bp Feature: domain Description: GIIM Note: maturase Location: 49984-50185 bp Feature: domain Description: GIIM Note: maturase Location: 49984-50185 bp Feature: gene Location: 50450-51328 bp Feature: domain Description: PRK09409 Location: 50453-51320 bp Feature: domain Description: PRK09409 Location: 50453-5132 0 bp Feature: gene Location: 51286-51681 bp Feature: domain Description: PRK09413 Location: 51316-51676 bp Feature: domain Description: PRK09413 Location: 51316-51676 bp Feature: gene Location: 51730-52179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51946-52168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51946-52 168 bp Feature: gene Location: 52783-53175 bp Feature: domain Description: TrbC Location: 52822-53098 bp Feature: domain Description: TrbC Location: 52 82 2 -53098 bp Feature: gene Location: 53179-53757 bp Feature: domain Description: TraV Location: 53326-53668 bp Feature: domain Description: TraV Location: 5332 6-53668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DsbA_DsbC_DsbG (cd03020), Big_3_3 (pfam13750), PKD (smart00089), RVT-GII, GIIM (pfam08388), PRK09409 (IS2 transposase TnpB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed), TrbC (pfam04956), TraV (TIGR02747)

Seq: LRJS01000067.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1351 GCID_ENTES_00088_NODE_6.ctg_1, whole genome shotgun sequence (279850 bp)
Overview 1 RT 1: 21413-28783 bp Neighborhood of RT #1 [21413, 28785] DUF932 RVT-Retrons GlpR ribokinase LplB Feature: gene Location: 21413-22120 bp Feature: gene Location: 22795-23616 bp Feature: domain Description: DUF932 Location: 22906-23581 bp Feature: domain Description: DUF93 2 Location: 22906-23 581 bp Feature: gene Location: 23867-25591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24005-24629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24005-24629 bp Feature: gene Location: 26502-27740 bp Feature: domain Description: GlpR Location: 26505-26697 bp Feature: domain Description: GlpR Location: 26505-26697 bp Feature: domain Description: ribokinase Location: 26802-27666 bp Feature: domain Description: ribokinase Location: 26802-27666 bp Feature: gene Location: 27889-28785 bp Feature: domain Description: LplB Location: 27904-28783 bp Feature: domain Description: LplB Location: 27904-28783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-Retrons, GlpR (COG1349), ribokinase (PTZ00292), LplB (COG4209)

Seq: LRJS01000047.1 Enterobacter hormaechei subsp. steigerwaltii strain SMART_1351 GCID_ENTES_00088_NODE_41.ctg_1, whole genome shotgun sequence (14851 bp)
Overview 1 RT 1: 1-6621 bp Neighborhood of RT #1 [1, 6629] DDE_Tnp_1_5 DDE_Tnp_IS1 RVT-GII PRK10276 umuC Feature: gene Location: 1-567 bp Feature: domain Description: DDE_Tnp_1_5 Location: 58-391 bp Feature: domain Description: DDE_Tnp_1_5 Location: 58-391 bp Feature: gene Location: 2185-2688 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2296-2686 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2296-2686 bp Feature: gene Location: 3034-4518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3436-4126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 36-4 126 bp Feature: gene Location: 4927-5358 bp Feature: domain Description: PRK10276 Location: 4978-5341 bp Feature: domain Description: PRK10276 Location: 4 978-534 1 bp Feature: gene Location: 5358-6629 bp Feature: domain Description: umuC Location: 5361-6621 bp Feature: domain Description: umuC Location: 5361-6621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), DDE_Tnp_IS1 (pfam03400), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)