myRT

myRT report for GCA_001526225.1_ASM152622v1

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Seq: LOYI01000113.1 Burkholderia ubonensis strain MSMB2046 MSMB2046_65, whole genome shotgun sequence (90111 bp)
Overview 1 RT 1: 56722-63940 bp Neighborhood of RT #1 [56722, 63975] gltS HTH_33 DDE_3 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 56722-57945 bp Ori: KVK78171.1 Feature: domain Description: gltS Location: 56728-57934 bp Feature: domain Description: gltS Location: 56728-57934 bp Feature: gene Location: 58379-59032 bp Ori: KVK78172.1 Feature: domain Description: HTH_33 Location: 58406-58574 bp Feature: domain Description: HTH_33 Location: 58406-58574 bp Feature: domain Description: DDE_3 Location: 58619-59018 bp Feature: domain Description: DDE_3 Location: 5861 9-5901 8 bp Feature: gene Location: 59080-60369 bp Ori: KVK78173.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59284-59974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59284-59974 bp Feature: gene Location: 62007-63590 bp Ori: KVK78174.1 Feature: domain Description: LZ_Tnp_IS66 Location: 62148-62361 bp Feature: domain Description: LZ_Tnp_IS66 Location: 621 48-62361 bp Feature: domain Description: zf-IS66 Location: 62388-62520 bp Feature: domain Description: zf-IS66 Location: 62388-62520 bp Feature: domain Description: DDE_Tnp_IS66 Location: 62568-63435 bp Feature: domain Description: DDE_Tnp_IS66 Location: 62568-63435 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 63453-63567 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 63453-63567 bp Feature: gene Location: 63622-63975 bp Ori: KVK78175.1 Feature: domain Description: TnpB_IS66 Location: 63649-63940 bp Feature: domain Description: TnpB_IS66 Location: 63649-63940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gltS (TIGR00210), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: LOYI01000042.1 Burkholderia ubonensis strain MSMB2046 MSMB2046_137, whole genome shotgun sequence (662 bp)
Overview 1 RT 1: 9-519 bp Neighborhood of RT #1 [9, 662] RVT-GII GIIM Feature: gene Location: 9-662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 -2 46 bp Feature: domain Description: GIIM Note: maturase Location: 303-519 bp Feature: domain Description: GIIM Note: maturase Location: 303-519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOYI01000074.1 Burkholderia ubonensis strain MSMB2046 MSMB2046_3, whole genome shotgun sequence (34386 bp)
Overview 1 RT 1: 1009-7031 bp Neighborhood of RT #1 [1009, 7042] DUF3141 RVT-Retrons VOC AraC Feature: gene Location: 1009-1221 bp Feature: gene Location: 1231-3489 bp Ori: KVK83479.1 Feature: domain Description: DUF3141 Location: 1357-3088 bp Feature: domain Description: DUF3 141 Location: 13 57-3 088 bp Feature: gene Location: 3738-5087 bp Ori: KVK83480.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4203-4839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4203 -483 9 bp Feature: gene Location: 5390-5776 bp Ori: KVK83481.1 Feature: domain Description: VOC Location: 5405-5726 bp Feature: domain Description: VOC Location: 5405-5726 bp Feature: gene Location: 6215-7042 bp Ori: KVK83482.1 Feature: domain Description: AraC Location: 6677-7031 bp Feature: domain Description: AraC Location: 6677-703 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), AraC (COG2207)